Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  147 bits (372), Expect = 7e-41
 Identities = 77/170 (45%), Positives = 107/170 (62%)

Query: 1   MSSAQSPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPREP 60
           MSS        +G LY  H  WL  WL R   CR+ A DL+Q+TFVRLL   +  T ++P
Sbjct: 1   MSSDHPLDHAAIGQLYHAHHAWLRGWLSRRTGCREHAADLAQETFVRLLNARRQQTLQQP 60

Query: 61  RAFLAAVAKGLMFDHFRRAALEQAYLAELALIPEAEQPSPEMQHLILEDLKAIDRLLGKL 120
           RA+L+++A+ LM D +RR  LE+AYL  LA  P+ E PS E + LIL+ L+ IDRLL +L
Sbjct: 61  RAYLSSIARSLMIDQYRRRELERAYLESLAHFPQVEVPSEETRLLILDSLERIDRLLDQL 120

Query: 121 SSKARAAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQCYVALYGE 170
             + R AFL ++LDG+  A+IA RLGVS + V + +++ +  CY   Y E
Sbjct: 121 KPRVREAFLLAQLDGLTCAQIALRLGVSKATVERDLSKALHACYRLRYVE 170