Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 179 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 75.1 bits (183), Expect = 6e-19
 Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 9/172 (5%)

Query: 7   PHADLVGA-LYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPREPRAFLA 65
           P  DL+ A  +R     +L +L++       A D++QD F + L         +PRAFL 
Sbjct: 4   PKPDLLSADAFRGFYTDILYFLRKRTDNASDAADMTQDVFTQWLDYRDRAKVEQPRAFLF 63

Query: 66  AVAKGLMFDHFRRAAL------EQAYLAELALIPEAEQPSPEMQHLILEDLKAIDRLLGK 119
            +A+ L+ DH+R+  +      +QA +       E   P   +Q L  + L+ +  +L +
Sbjct: 64  QMARNLLRDHWRKQKVRHTVHSDQADMDAEPATDEQNDPMAAVQRL--QRLEQLKEVLAE 121

Query: 120 LSSKARAAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQCYVALYGEP 171
           LS + R A +  R +G+  A+IAER+G+S S V ++IA  +  C   L  EP
Sbjct: 122 LSPRRREALMLHRFEGLSQAQIAERMGISTSMVEKHIAFALLHCKRRLQHEP 173