Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 162 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  135 bits (341), Expect = 3e-37
 Identities = 67/156 (42%), Positives = 102/156 (65%)

Query: 12  VGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPREPRAFLAAVAKGL 71
           V  LY DH  WL  WL+R + C + A DL+QDTF+R+L   +  T  EPRAFL  VAK +
Sbjct: 7   VEVLYNDHHHWLTGWLRRKLGCPESAADLAQDTFMRVLTAREAPTLIEPRAFLTTVAKRV 66

Query: 72  MFDHFRRAALEQAYLAELALIPEAEQPSPEMQHLILEDLKAIDRLLGKLSSKARAAFLHS 131
           +F+ +RR  LE+AYL  LA +PE   PS E + +IL+ L  +D+LL  L  + + AFL +
Sbjct: 67  LFNFYRRQDLERAYLDALAQMPEHVAPSEEERAIILQTLVELDQLLDGLPVQVKRAFLLA 126

Query: 132 RLDGMGHAEIAERLGVSVSRVRQYIAQGMRQCYVAL 167
           + DG+ +A+I   LG+S++ V++++++   +CY AL
Sbjct: 127 QCDGLTYAQIGAELGISIATVKRHLSKAAMRCYFAL 162