Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 169 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score =  147 bits (370), Expect = 1e-40
 Identities = 74/154 (48%), Positives = 100/154 (64%)

Query: 12  VGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPREPRAFLAAVAKGL 71
           V  LY +H GWL AWL++ + C   A DL+ DTFVRLL + +     EPRA+LA +A GL
Sbjct: 13  VQTLYSNHHGWLHAWLRKKLGCSHNAADLAHDTFVRLLSKTEPVAAAEPRAYLATIAHGL 72

Query: 72  MFDHFRRAALEQAYLAELALIPEAEQPSPEMQHLILEDLKAIDRLLGKLSSKARAAFLHS 131
           + D  RR ALE+AYL  LA +PE + PS E + ++LE L AID +L  +    R AF+ S
Sbjct: 73  VVDFHRRRALERAYLDTLAALPEPQLPSLEARAIVLEALVAIDTMLDGMKPPVRQAFMLS 132

Query: 132 RLDGMGHAEIAERLGVSVSRVRQYIAQGMRQCYV 165
           +LDG+ +AEIA RLGVSV  V  Y+ + +  CY+
Sbjct: 133 QLDGLTYAEIAARLGVSVRTVNNYMLKALEHCYL 166