Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 175 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score =  139 bits (351), Expect = 2e-38
 Identities = 75/164 (45%), Positives = 104/164 (63%), Gaps = 9/164 (5%)

Query: 8   HADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTP--------RE 59
           H   +  LY DH GWL  WL++ +     A DL+QDTF+R+L     DTP        RE
Sbjct: 8   HHPHIQTLYCDHHGWLQGWLRKKLGNAFDAADLAQDTFLRILAAPD-DTPEKQGDWQLRE 66

Query: 60  PRAFLAAVAKGLMFDHFRRAALEQAYLAELALIPEAEQPSPEMQHLILEDLKAIDRLLGK 119
           PRA+L  VAK L+ + +RR +LEQAY   L+ +PE + PSPE Q +ILE L+ ID +L  
Sbjct: 67  PRAYLTVVAKRLLANLYRRRSLEQAYFEALSALPEPQAPSPEQQAIILETLQEIDAMLDG 126

Query: 120 LSSKARAAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQC 163
           L+   R AFL ++L+G+G+AEIA  LGVS   V++Y+A+ M +C
Sbjct: 127 LAPPVRRAFLMAQLEGLGYAEIAATLGVSERTVKRYMAEAMARC 170