Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 171 a.a., FIG006045: Sigma factor, ECF subfamily from Variovorax sp. SCN45

 Score =  144 bits (364), Expect = 6e-40
 Identities = 69/166 (41%), Positives = 107/166 (64%)

Query: 1   MSSAQSPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPREP 60
           M++++ P    + +LY DH GWL  WL + +    +  DL+ DTFVRLL +++    +EP
Sbjct: 1   MAASEFPAHPQIESLYSDHHGWLRGWLGKKLGDMHQGADLAHDTFVRLLAKQEAVAIQEP 60

Query: 61  RAFLAAVAKGLMFDHFRRAALEQAYLAELALIPEAEQPSPEMQHLILEDLKAIDRLLGKL 120
           RAFL  VA+ ++ +H+RR  LE+AYL  LA +P+A  PS E + ++L+ L  IDRLL  L
Sbjct: 61  RAFLTTVAQRVLANHWRRQQLERAYLEALAQVPQAMAPSEEERAILLQTLTEIDRLLNGL 120

Query: 121 SSKARAAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQCYVA 166
               R  FL ++LDG+GHAE+A  + +S++ V++Y+ +   QCY A
Sbjct: 121 PPPVRRVFLLTQLDGLGHAEVAALMSISITTVKRYLVKAAMQCYFA 166