Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 168 a.a., sigma factor from Sphingobium sp. HT1-2

 Score = 78.2 bits (191), Expect = 7e-20
 Identities = 55/158 (34%), Positives = 82/158 (51%), Gaps = 12/158 (7%)

Query: 15  LYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRL---LGREQLDTPREPRAFLAAVAKGL 71
           +Y  HR  L+ + +R +  R  AED+ QD ++ L   LGR  L   R+P  +L  + + L
Sbjct: 6   IYAAHRRALIDYAERIVGSRAEAEDVVQDAWLHLRQALGRGVL---RDPVPYLYRIVRNL 62

Query: 72  MFDHFRRAALEQAYLAE-----LALIPEAEQPSPEMQHLILEDLKAIDRLLGKLSSKARA 126
             D  RRA  +  +LAE     LA +P+ + PSPE       +L  +++ L  L  + R 
Sbjct: 63  AIDVQRRARRQSRHLAEGGDAHLAEVPD-DTPSPEAVVAAQAELHCVEQALASLPERQRI 121

Query: 127 AFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQCY 164
           A    RL G    EIA+RL +SVS     IAQG+ +C+
Sbjct: 122 AIEMYRLGGFKLREIADRLSISVSLTHLLIAQGLAECH 159