Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

 Score =  147 bits (372), Expect = 7e-41
 Identities = 82/167 (49%), Positives = 107/167 (64%), Gaps = 1/167 (0%)

Query: 1   MSSAQSPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQ-LDTPRE 59
           M  A  P    + ALYR+HRGWL AWL+R M     A DLSQDTF+R+L   Q L   RE
Sbjct: 1   MIDAAPPPEPGLPALYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIRE 60

Query: 60  PRAFLAAVAKGLMFDHFRRAALEQAYLAELALIPEAEQPSPEMQHLILEDLKAIDRLLGK 119
           PRA+L  V K L+ +  +R +LEQAYL  LA +PE   PSPE + ++LE L+A+D LL  
Sbjct: 61  PRAYLLTVGKRLLSNFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDG 120

Query: 120 LSSKARAAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQCYVA 166
           L    R AFL S+L+G+G+AEI +RLGV    V++Y+AQ    C +A
Sbjct: 121 LKPAIRKAFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQAYEHCLLA 167