Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

 Score =  122 bits (305), Expect = 4e-33
 Identities = 68/155 (43%), Positives = 95/155 (61%), Gaps = 5/155 (3%)

Query: 12  VGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTP---REPRAFLAAVA 68
           V  LY +H GWL  WL R +     A DL+ DTFVRLL R+    P    EPRA L  +A
Sbjct: 12  VQTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQ--GNPYFGNEPRALLTHIA 69

Query: 69  KGLMFDHFRRAALEQAYLAELALIPEAEQPSPEMQHLILEDLKAIDRLLGKLSSKARAAF 128
           KGL+ D +RR  +E+AYL  +A +P+ E PSPE + LILE L  ID +L  + ++ R  F
Sbjct: 70  KGLVVDRWRRQDVERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRDMPARVRQVF 129

Query: 129 LHSRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQC 163
           L S+LDG+ +A+IAE+L VS+  +++ +      C
Sbjct: 130 LLSQLDGLTYAQIAEQLQVSLITIKRDMRTAFLAC 164