Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 84.7 bits (208), Expect = 2e-21
 Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 10/164 (6%)

Query: 6   SPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTP-REPRAFL 64
           SP + L+ A +++H   LL +L R M+ RQRA D++Q+T+++L+  ++   P    R+F+
Sbjct: 4   SPMSGLL-ASFQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFI 62

Query: 65  AAVAKGLMFDHFRRAALEQAYLA-----ELALIPEAEQPSPEMQHLILEDLKAIDRLLGK 119
             VA  L  D  RR   EQ   A     + A       P+PE   L  E L+ +D+ L +
Sbjct: 63  FRVAGNLAIDALRR---EQRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQ 119

Query: 120 LSSKARAAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQC 163
           L   AR A L +R++G+   ++A+RLGVS S V +YI Q +R C
Sbjct: 120 LPDNARQALLLNRVEGLTQKQVAQRLGVSESMVAKYIGQALRHC 163