Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

 Score = 81.6 bits (200), Expect = 6e-21
 Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 9/150 (6%)

Query: 16  YRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPRE----PRAFLAAVAKGL 71
           + DH   L+    R +  RQ+AEDL+ D FVR+L     +TPRE    PRA+L   A+ +
Sbjct: 7   FLDHYHELIGTWTRKLRSRQQAEDLTHDAFVRVL-----ETPREQVEQPRAYLHQAARNI 61

Query: 72  MFDHFRRAALEQAYLAELALIPEAEQPSPEMQHLILEDLKAIDRLLGKLSSKARAAFLHS 131
             D FRR    QA   E           PE     LE   +++R L +L    R  F+  
Sbjct: 62  AVDGFRREDRRQALEREAFEEGATGSGDPEAYVHALELADSVERALAELPLNCRQVFIWQ 121

Query: 132 RLDGMGHAEIAERLGVSVSRVRQYIAQGMR 161
           +L+G+  AEIAER+G+S + V +Y+ + +R
Sbjct: 122 KLEGLTQAEIAERMGLSKNMVEKYMIRTLR 151