Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 178 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  117 bits (293), Expect = 1e-31
 Identities = 68/162 (41%), Positives = 93/162 (57%), Gaps = 2/162 (1%)

Query: 3   SAQSPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPRE-PR 61
           SA +P  DL   LYR H GW+  WLQR +     A +L+QD FVRLL + ++    E  R
Sbjct: 6   SAPAPGFDLE-ELYRSHHGWIRQWLQRKLGNAHDAAELAQDVFVRLLSKPRVFNDHEHAR 64

Query: 62  AFLAAVAKGLMFDHFRRAALEQAYLAELALIPEAEQPSPEMQHLILEDLKAIDRLLGKLS 121
           A+L  +++    D +RR  +EQAYL  LA  PE   PS E Q +ILE L+ +  +  ++ 
Sbjct: 65  AYLGRMSRNACVDFWRRRRVEQAYLEVLAAQPEQLAPSLEHQAVILETLEQLQAMFERMP 124

Query: 122 SKARAAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQC 163
            +   AF  ++L GM   EIAE+LGVS   V  Y+AQ M QC
Sbjct: 125 QRVAEAFSMAQLQGMKQREIAEQLGVSERSVNSYLAQAMYQC 166