Pairwise Alignments

Query, 370 a.a., putative Membrane protein from Pseudomonas putida KT2440

Subject, 525 a.a., conserved protein of unknown function containing PepSY-associated TM helix domain from Pseudomonas putida KT2440

 Score = 68.9 bits (167), Expect = 3e-16
 Identities = 87/378 (23%), Positives = 154/378 (40%), Gaps = 28/378 (7%)

Query: 1   MKSPTIRRWSLIHTWSSLVCTLFLLLLAVTGLPLIFHHELEHLLGDAPELREMPAGTPHL 60
           MK    +  + +HTW+ L+    L  + +TG    F  E+ H     PE+R        +
Sbjct: 1   MKEGFRQAMAWLHTWTGLIFGWLLFAIFLTGTLSYFKEEITHW--SQPEVRSHALDP--I 56

Query: 61  DLQQLVLKAEQHRPGEVMQYFGYDEDEPNGVVAITAATASTDPNLSHTFMLDARTGEAVA 120
           +   +  +  Q   G    +F    +E    +++     S  P       LD +TG+ V 
Sbjct: 57  NSLAVAQRYLQDNAGHSSTWFIRMPNEREAALSVGYRDPSGGPRGFVRKTLDTQTGQPVE 116

Query: 121 MPAANGGFMMVMLRLHVDMFAGLP-GKLLLAFMGVLFIVAIVSGTVLYAPFMRRLEFGTV 179
              + GG      R H  +    P G+ L  F   + ++ +V+G + +    +  EF T 
Sbjct: 117 ARDSRGGEFFY--RFHFQLQMPYPVGRWLSTFCAFIMLLGLVTGIITHKKIFK--EFFTF 172

Query: 180 RHKKSRRLRWLDLHNLIGVVTLAWALTVSVTGVI----SALSDLVIAAWRNDSLAAM--V 233
           R  K +R  WLD HN IGV+ L + L +S + ++      +   ++A++ ND+      +
Sbjct: 173 RPGKGQR-SWLDGHNAIGVLVLPFHLMISYSSLVLFMYMVMPAGIMASYGNDTDKYFNDL 231

Query: 234 APYRDAPPLVERA-PATRLLDI---AEQAAPGMRPDFIAF--PGTRFSSEHHYAVFMNGA 287
               DAP   + A P   L  +    ++  PG R   I    PG    S        + A
Sbjct: 232 FGRNDAPKAAQVATPLVALPSLYAKVQELQPGARVGNIQVQNPG---DSNARVTFTQSAA 288

Query: 288 THLSSHLFTPVLIDARTLEVTAVG--DRPWYMDAMGLSQPLHFGDYGGRPMQILWALLDV 345
            H++         D  +  + + G  +    M A   +  LH G++ G  ++ L+    V
Sbjct: 289 DHVAYRRSANWTFDGASGALLSQGKPESGVMMTAFSFA-GLHMGNFAGPWLRWLYFFFGV 347

Query: 346 LTIIVLGSGLYLWWSKQR 363
               V+G+GL +W  K++
Sbjct: 348 AGTAVIGTGLVMWLGKRQ 365



 Score = 35.0 bits (79), Expect = 5e-06
 Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 20/210 (9%)

Query: 11  LIHTWSSLVCTLFLLLLAVTGLPLIFHHELEHLLGDAPELREMP----AGTPHLDLQQLV 66
           L+ ++SSLV  LF+ ++   G+   + ++ +    D     + P      TP + L  L 
Sbjct: 197 LMISYSSLV--LFMYMVMPAGIMASYGNDTDKYFNDLFGRNDAPKAAQVATPLVALPSLY 254

Query: 67  LKAEQHRPG-EVMQYFGYDEDEPNGVVAITAATAS-TDPNLSHTFMLDARTGEAVAMPAA 124
            K ++ +PG  V      +  + N  V  T + A       S  +  D  +G  ++    
Sbjct: 255 AKVQELQPGARVGNIQVQNPGDSNARVTFTQSAADHVAYRRSANWTFDGASGALLSQGKP 314

Query: 125 NGGFMMVMLR---LHVDMFAGLPGKLLLAFMGVLFIVAIVSGTVLYAPFMRRLEFGTVRH 181
             G MM       LH+  FAG   + L  F GV     I +G V++    R+L+     H
Sbjct: 315 ESGVMMTAFSFAGLHMGNFAGPWLRWLYFFFGVAGTAVIGTGLVMWLG-KRQLKHAKNGH 373

Query: 182 KKSRRLRWLDLHN-------LIGVVTLAWA 204
                LR +++ N       L+ V +  WA
Sbjct: 374 MPG-ELRLVEVLNIASMSGLLLAVASFFWA 402