Pairwise Alignments

Query, 314 a.a., Carnitine uptake ABC transporter, periplasmic component from Pseudomonas putida KT2440

Subject, 311 a.a., glycine/betaine ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  404 bits (1038), Expect = e-117
 Identities = 196/298 (65%), Positives = 236/298 (79%)

Query: 5   IRRSLLPLALSSIVATPLFAAEPAACKNVRLGVVNWTDVIATSAMAQVLLDGLGYQTKQT 64
           ++R LL L  +++++    AAEPA+CKN+R+GVV+WTDV+ATS MA VLL+GLGY +KQT
Sbjct: 1   MKRLLLTLTAAALLSAHAMAAEPASCKNIRMGVVSWTDVVATSGMADVLLNGLGYDSKQT 60

Query: 65  SASQQIIFAGIRDKRLDMFLGYWNPIMTQTITPFVDANQFKVLDKPSLEDARATLAVPKY 124
           SA QQIIFAGIRDKRLD+FLGYW P M   I PF+ A Q KV D PSL DA+ATLAVP+Y
Sbjct: 61  SAVQQIIFAGIRDKRLDIFLGYWKPAMDNNIAPFLAAKQVKVFDTPSLADAQATLAVPQY 120

Query: 125 LYDKGLKTFADIHKFEKELGGKIYGIEPGSGANTQIKAMITKNQFDLGKFQLVESSEAGM 184
           + D GLKTFADI +F+ +LGGKIYGIEPGSGANT I+ MI  N+F LG F+LV S EAGM
Sbjct: 121 VADAGLKTFADIARFKDKLGGKIYGIEPGSGANTDIQKMIDTNRFGLGGFKLVASGEAGM 180

Query: 185 LAAVDRAVRRKEAVVFFGWAPHPMNVNIDMAYLGDSQDALGPDEGRATVWTVTAPDYAER 244
           LAAV RAV RKE VVF GW PHPMN+N+ MAYL  S+D  GPDEGRATV TVTAPD+A+R
Sbjct: 181 LAAVQRAVNRKEFVVFVGWTPHPMNINMKMAYLTGSEDVFGPDEGRATVSTVTAPDFAQR 240

Query: 245 CPNALRLLANLKFSAEDESRMMQPLLDHKDALESARQWLKDHPEDKARWLEGVTTFDG 302
           CPNA R+L NL F+A  ES++M P+++ +   + ARQWL+DHPED  RWL GVT FDG
Sbjct: 241 CPNANRVLENLTFTAAQESQLMVPIMERESPQDVARQWLRDHPEDLQRWLAGVTAFDG 298