Pairwise Alignments

Query, 314 a.a., Carnitine uptake ABC transporter, periplasmic component from Pseudomonas putida KT2440

Subject, 299 a.a., glycine/betaine ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 76.6 bits (187), Expect = 7e-19
 Identities = 73/264 (27%), Positives = 117/264 (44%), Gaps = 18/264 (6%)

Query: 9   LLPLALSSIVATPLFAAEPAACKNVRLGVVNWTDVIATSAMAQVLL-DGLGYQTKQTSAS 67
           LL LAL +  A      +P     VR+G VNW+D   T  +A   L + L    K   A 
Sbjct: 15  LLGLALGASAAVTQAEEKPP----VRIGWVNWSDTEITVKLASTALQEHLKQSVKLVMAD 70

Query: 68  QQIIFAGIRDKRLDMFLGYWNPIMTQTITPFVDANQFKVLDKPSLEDARATLAVPKYLYD 127
             I F  + +  +D+    W P    T   F D  + ++ D   L + R  +AVP  +  
Sbjct: 71  IGIQFQALANGNIDLIPMVWLP---STHKAFYDKYKDRLEDLGVLYEGRIGMAVPTSVPV 127

Query: 128 KGLKTFADIHK--FEKELGGKIYGIEPGSGANT-QIKAMITKNQFDLGKFQLVESSEAGM 184
             + +  D++K    ++  GKI   E G+G  T  +KA+     + L  ++LV SSE+GM
Sbjct: 128 AEVASVEDLNKPGIREKFDGKILTSEVGNGQYTLTVKAI---EDYKLTGYKLVGSSESGM 184

Query: 185 LAAVDRAVRRKEAVVFFGWAPHPMNVNIDMAYLGDSQDALGPDEGRATVWTVTAPDYAER 244
           L  +DR ++R +  +   W+PH M     + YL D +   G   G   +  +    +++ 
Sbjct: 185 LNEMDRNLKRDKWSLVNAWSPHWMFSKWSLRYLEDPKQIFG---GAEQIHAMARKGFSQE 241

Query: 245 CPNALRLLANLKFSAED-ESRMMQ 267
            P      A+      D E+ MMQ
Sbjct: 242 HPEVAYFFAHFSLPQADLEALMMQ 265