Pairwise Alignments

Query, 314 a.a., Carnitine uptake ABC transporter, periplasmic component from Pseudomonas putida KT2440

Subject, 315 a.a., choline / betaine / carnitine ABC transporter - substrate binding protein from Pseudomonas putida KT2440

 Score =  270 bits (689), Expect = 4e-77
 Identities = 148/305 (48%), Positives = 193/305 (63%), Gaps = 7/305 (2%)

Query: 12  LALSSIVATPLFA--AEPAACKNVRLGVVNWTDVIATSAMAQVLLDGLGYQTKQTSASQQ 69
           L L ++++ PL A  AEP  C+ VR   V WTD+  T+A   V+L+ LGY+T  T  S  
Sbjct: 7   LLLVALLSAPLLAQAAEPEQCQTVRFSDVGWTDITVTTATTSVVLEALGYKTHTTMISVP 66

Query: 70  IIFAGIRD-KRLDMFLGYWNPIMTQTITPFVDANQFKVLDKPSLEDARATLAVPKYLYDK 128
           + +  +   K LD+FLG W P M   I  + DA   + + + +LE+A+ TLAVP+ LYDK
Sbjct: 67  VTYKSLATGKDLDVFLGNWMPTMENDIKQYRDAGTVETV-RANLENAKYTLAVPQALYDK 125

Query: 129 GLKTFADIHKFEKELGGKIYGIEPGSGANTQIKAMITKNQFDL--GKFQLVESSEAGMLA 186
           GLK F+DI KF+KEL GKIYGIEPG+  N  I++MI KN F L    F++V+SSEAGML+
Sbjct: 126 GLKDFSDIPKFKKELDGKIYGIEPGNDGNRTIQSMIDKNAFGLKDAGFKIVQSSEAGMLS 185

Query: 187 AVDRAVRRKEAVVFFGWAPHPMNVNIDMAYLGDSQDALGPDEGRATVWTVTAPDYAERCP 246
            VDRA +R EA+VF GW PHPMN    M YL    D  GPD G+ATV T T   Y + C 
Sbjct: 186 QVDRAQKRGEALVFLGWEPHPMNTRFKMQYLTGGDDFFGPDFGKATVLTNTRKGYTQECS 245

Query: 247 NALRLLANLKFSAEDESRMMQPLLDHKDALE-SARQWLKDHPEDKARWLEGVTTFDGKPA 305
           N  +LL NL F  +DES MM  +LD K   E +A++W+KD+P     WL GVTT DGKP 
Sbjct: 246 NVGQLLKNLSFELKDESTMMGYVLDDKMKPEAAAKKWIKDNPGKLDAWLAGVTTVDGKPG 305

Query: 306 ADNLK 310
            + +K
Sbjct: 306 LEAVK 310