Pairwise Alignments

Query, 314 a.a., Carnitine uptake ABC transporter, periplasmic component from Pseudomonas putida KT2440

Subject, 332 a.a., glycine betaine ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score = 45.4 bits (106), Expect = 2e-09
 Identities = 62/300 (20%), Positives = 119/300 (39%), Gaps = 33/300 (11%)

Query: 24  AAEPAACKNVRLGVVNWTDVIATSAMAQVLLD-GLGYQTKQTSASQQIIFAGIRDK-RLD 81
           AA  A C NV +  +NW      + + + +L+ G G   +  +         + +K + D
Sbjct: 20  AAYAADCGNVTIASMNWQSAEVAANLDKFILEKGYGCSAEIVTGDTVPTLTSMAEKGQPD 79

Query: 82  MFLGYWNPIMTQTITPFVDANQFKVLDKPSLEDARATLAVPKYLYDKG--LKTFADIHKF 139
           +    W  +  + +   ++  +     K   + A     +PKYL D    LKT  D+ K 
Sbjct: 80  IAPEAWVSLQPEIVKHGLEGGKVVAAAKILSDGAVQGWWIPKYLADANPDLKTIPDLFKH 139

Query: 140 -------EKELGGKIYGIEPGSGANTQIKAMITKNQFDLGKFQLVES-SEAGMLAAVDRA 191
                  E +  G ++    G G       +      +   F LV++ S AG+  ++ +A
Sbjct: 140 PELFPAPEDKSKGAVFNGPQGWGGTVVTAQLFKAFGGEKAGFTLVDTGSAAGLDGSIAKA 199

Query: 192 VRRKEAVVFFGWAPHPMNVNIDMAYLGDSQDALGPDEGRAT-----------------VW 234
              K+  V + WAP  +    +M  LG   +    +  R T                 V 
Sbjct: 200 YEAKQPWVGYYWAPTSLLGKYEMVKLGFGTEYDAAEWKRCTSVADCPDPKPNAWQVDDVQ 259

Query: 235 TVTAPDYAERCPNALRLLANLKFSAEDESRMMQPLLDHKDALE-SARQWLKDHPEDKARW 293
           T+ +  +A+R   A+  L    ++    ++++  + D++   E  A+Q+LK   E++A W
Sbjct: 260 TLVSKSFADRAGPAMDYLNKRAWTNATVNKLIAWMTDNQATGEDGAKQFLK---ENEALW 316