Pairwise Alignments

Query, 368 a.a., AraC-family transcriptional regulator from Pseudomonas putida KT2440

Subject, 398 a.a., HTH-type transcriptional activator RhaS from Azospirillum sp. SherDot2

 Score =  155 bits (393), Expect = 1e-42
 Identities = 114/367 (31%), Positives = 176/367 (47%), Gaps = 21/367 (5%)

Query: 9   PTQNRTTPQSIGFLLLDNFTLISLASAVEPLRMANQLSGRELY---RWHTLTIDGGQVWA 65
           P Q      S+GF+L +NFTL +LA  ++ LR+A     R      RW  +      V +
Sbjct: 31  PRQEERALLSVGFILTNNFTLTALAPFIDALRLAADEGDRSRQIRCRWTIMGSRAEPVMS 90

Query: 66  SDGLQITPDAAISNAPPIDTVIVCGGV---GIQRSVTREHVTWLQAQARQSRRLGAVCTG 122
           S G+ +     +++    D V+V GG+   G Q  +  E + +L+A A     L  VCTG
Sbjct: 91  SCGIGVARWEPLTDPRRFDYVVVVGGLLHAGPQ--LDDETLAYLRAAASYGVTLVGVCTG 148

Query: 123 SWALACAGLLDGFDCSVHWECLAAMQEAFPR-VNMSTRLFTLDRNRFTSSGGTAPLDMML 181
           S+ L+  GL+    C V W       E FP  V ++ +L+ +DR+R T SGG    D+  
Sbjct: 149 SFVLSRIGLMKNRRCCVSWYHHRDFIEEFPDLVPVADQLYVVDRDRITCSGGAGVADLAA 208

Query: 182 HLISRDHGRELSAAISEMFVYERIRNEQDHQRVPLKHMLGTNQPKLQEIVALMEANLEEP 241
            LI R  GR  +     + + ++ R     Q  P   +  TN  +++  + LME ++ +P
Sbjct: 209 FLIERHLGRATAQKTMHILLIDKARPASQSQPQPPTVVEITND-RVRRALLLMEQHISDP 267

Query: 242 IDLDELAVYVSVSRRQLERLFQKYLHCSPSRYYLKLRLIRARQLLKQTPMSIIEVASVCG 301
           + ++E+   ++VS RQ ERLF+  +  SP+ YY  LRL     LL+ T  S+  +A+  G
Sbjct: 268 LSVEEIVHRLNVSTRQFERLFRLAVGTSPATYYRSLRLRYGHWLLRNTKRSVTAIANEAG 327

Query: 302 FVSTPHFSKCYREYFGIPPRDERVGSNTAQQVAMMPIPQAMTLSPHSGPMAALSQARNES 361
           F    HFS+ +RE FG+ P + R    TA   A           PH  P+AA  +    S
Sbjct: 328 FADCAHFSRQFRELFGVSPSEVR---RTAGPDA--------EADPHFSPLAAFRRTNANS 376

Query: 362 TFASVRL 368
                RL
Sbjct: 377 LLPDRRL 383