Pairwise Alignments

Query, 315 a.a., choline / betaine / carnitine ABC transporter - substrate binding protein from Pseudomonas putida KT2440

Subject, 328 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score =  343 bits (880), Expect = 3e-99
 Identities = 175/308 (56%), Positives = 214/308 (69%), Gaps = 3/308 (0%)

Query: 6   SLLLVALLSAPLLAQAAEPEQCQTVRFSDVGWTDITVTTATTSVVLEALGYKTHTTMISV 65
           S L V L+ A    QAA+P  C+ VRF DVGWTDI  TTA  SV L+ALGYK  T++ SV
Sbjct: 19  STLAVGLMLAAGTVQAADPASCKAVRFGDVGWTDIAATTALASVTLDALGYKPTTSVSSV 78

Query: 66  PVTYKSLATGKDLDVFLGNWMPTMENDIKQYRDAGTVETVRANLENAKYTLAVPQALYDK 125
           PV Y  L T K LDVFLGNWMPTME  IK   + G+VE  R NLE AKYTLAVP    + 
Sbjct: 79  PVVYLGLKT-KSLDVFLGNWMPTMETFIKPVLEDGSVEVTRVNLEGAKYTLAVPTYAAEA 137

Query: 126 GLKDFSDIPKFKKELDGKIYGIEPGNDGNRTIQSMIDKNAFGLKDAGFKIVQSSEAGMLS 185
           GLK F D+ K+K +LDGKIYGIE GNDGN  I  M+  +AFGLKD  FK+V+SSEAGML+
Sbjct: 138 GLKSFKDLAKYKDKLDGKIYGIEAGNDGNLIIDKMLRADAFGLKD--FKMVESSEAGMLA 195

Query: 186 QVDRAQKRGEALVFLGWEPHPMNTRFKMQYLTGGDDFFGPDFGKATVLTNTRKGYTQECS 245
           +V RA +  + + FLGW PHPMN    + YL+ GDD+FGP+FG ATV TN RKGY  EC 
Sbjct: 196 EVKRAVRAKKWIAFLGWAPHPMNKTMDITYLSDGDDWFGPNFGGATVSTNVRKGYAAECP 255

Query: 246 NVGQLLKNLSFELKDESTMMGYVLDDKMKPEAAAKKWIKDNPGKLDAWLAGVTTVDGKPG 305
           N+G+ L NL F ++ E+++M  +++   KPEA A  W+K NP  L  WL+GVTT+DGK G
Sbjct: 256 NIGKFLSNLVFTVEMENSVMDGIMNGGRKPEAVAADWLKKNPAVLKTWLSGVTTLDGKDG 315

Query: 306 LEAVKAKL 313
           L A +AKL
Sbjct: 316 LAAAQAKL 323