Pairwise Alignments

Query, 315 a.a., choline / betaine / carnitine ABC transporter - substrate binding protein from Pseudomonas putida KT2440

Subject, 345 a.a., glycine betaine transporter periplasmic subunit from Agrobacterium fabrum C58

 Score = 52.4 bits (124), Expect = 2e-11
 Identities = 62/218 (28%), Positives = 92/218 (42%), Gaps = 25/218 (11%)

Query: 6   SLLLVALLSAPLLAQAAE-PEQCQTVRF--SDVGWTDITVTTATTSVVLEALGYKTHTTM 62
           S ++ A L     A AAE P   +T+RF  SD    +  V    T    EALGYK   + 
Sbjct: 13  STIVAASLPVLSSASAAELPGDGKTIRFAQSDSLGANYVVAKIVTKG-FEALGYKVKLST 71

Query: 63  ISVPVTYKSLATGKDLDVFLGNWMPTMENDIKQYRDAGTVETVRANLENAKYTLAVPQAL 122
           ++  + ++++A G DLD+      P  E   ++  D   +   +  +E       +   L
Sbjct: 72  VNTTLFFQAVAQG-DLDIATDINFPQREPGFRKVADKADM-IGKGLIEGG----GINGYL 125

Query: 123 YDKGLKDFSDIPKFKKELDGKIYGI------------EPGNDGNRTIQSMIDKNAFGLKD 170
            DK   D  +I    +  D KI  +            +PG      ++  +DK  FGLKD
Sbjct: 126 IDKKTADAYNIKTLDQMKDPKIAALFGTDGKADLINCDPGWSCGDVVEYQLDK--FGLKD 183

Query: 171 AGFKIVQSSEAGMLSQVDRAQKRGEALVFLGWEPHPMN 208
               +    EA M+  V RA KRGE + F  W P  MN
Sbjct: 184 TVKSVRGKYEALMVEAVARA-KRGEPVFFYAWSPSWMN 220