Pairwise Alignments

Query, 315 a.a., choline / betaine / carnitine ABC transporter - substrate binding protein from Pseudomonas putida KT2440

Subject, 332 a.a., glycine betaine ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score = 45.4 bits (106), Expect = 2e-09
 Identities = 62/306 (20%), Positives = 117/306 (38%), Gaps = 35/306 (11%)

Query: 21  AAEPEQCQTVRFSDVGWTDITVTTATTSVVLEALGYKTHTTMIS---VPVTYKSLATGKD 77
           AA    C  V  + + W    V       +LE  GY     +++   VP T  S+A    
Sbjct: 20  AAYAADCGNVTIASMNWQSAEVAANLDKFILEK-GYGCSAEIVTGDTVP-TLTSMAEKGQ 77

Query: 78  LDVFLGNWMPTMENDIKQYRDAGTVETVRANL-ENAKYTLAVPQALYDKG--LKDFSDI- 133
            D+    W+      +K   + G V      L + A     +P+ L D    LK   D+ 
Sbjct: 78  PDIAPEAWVSLQPEIVKHGLEGGKVVAAAKILSDGAVQGWWIPKYLADANPDLKTIPDLF 137

Query: 134 ------PKFKKELDGKIYGIEPGNDGNRTIQSMIDKNAFGLKDAGFKIVQS-SEAGMLSQ 186
                 P  + +  G ++   P   G   + + + K AFG + AGF +V + S AG+   
Sbjct: 138 KHPELFPAPEDKSKGAVFN-GPQGWGGTVVTAQLFK-AFGGEKAGFTLVDTGSAAGLDGS 195

Query: 187 VDRAQKRGEALVFLGWEPHPMNTRFKMQYLTGGDDFFGPDFGKAT--------------- 231
           + +A +  +  V   W P  +  +++M  L  G ++   ++ + T               
Sbjct: 196 IAKAYEAKQPWVGYYWAPTSLLGKYEMVKLGFGTEYDAAEWKRCTSVADCPDPKPNAWQV 255

Query: 232 --VLTNTRKGYTQECSNVGQLLKNLSFELKDESTMMGYVLDDKMKPEAAAKKWIKDNPGK 289
             V T   K +          L   ++     + ++ ++ D++   E  AK+++K+N   
Sbjct: 256 DDVQTLVSKSFADRAGPAMDYLNKRAWTNATVNKLIAWMTDNQATGEDGAKQFLKENEAL 315

Query: 290 LDAWLA 295
              W++
Sbjct: 316 WKGWVS 321