Pairwise Alignments

Query, 315 a.a., choline / betaine / carnitine ABC transporter - substrate binding protein from Pseudomonas putida KT2440

Subject, 308 a.a., ABC transporter, substrate binding protein (glycine betaine) from Agrobacterium fabrum C58

 Score =  272 bits (696), Expect = 7e-78
 Identities = 138/295 (46%), Positives = 194/295 (65%), Gaps = 5/295 (1%)

Query: 19  AQAAEPEQCQTVRFSDVGWTDITVTTATTSVVLEALGYKTHTTMISVPVTYKSLATGKDL 78
           A AA+ + C+ VR ++ GW D+  TT     +L++L Y+  + ++ + V Y SL + KDL
Sbjct: 17  AFAADADACKMVRMAEPGWNDLAFTTGIAMTLLKSLHYQPQSQLLGIDVIYTSLKS-KDL 75

Query: 79  DVFLGNWMPTMENDIKQYRDAGTVETVRANLENAKYTLAVPQALYDKGLKDFSDIPKFKK 138
           DVF+G W P M N  K Y++ G+VE VR NL  AKYT AVP  +++ G+KDFSD+ KF  
Sbjct: 76  DVFMGYWDPAMVNYYKPYKEDGSVEKVRTNLVGAKYTFAVPTYVWEAGVKDFSDLQKFAD 135

Query: 139 ELDGKIYGIEPGNDGNRTIQSMIDKNAFGLKDAGFKIVQSSEAGMLSQVDRAQKRGEALV 198
           + D K+YGIEPG+  N+ +   +   A GLKD  +++V+SSE GMLSQV R  +    +V
Sbjct: 136 KFDRKLYGIEPGS--NQLMLDAVKDPALGLKD--WEVVESSEQGMLSQVARFNRNKTFIV 191

Query: 199 FLGWEPHPMNTRFKMQYLTGGDDFFGPDFGKATVLTNTRKGYTQECSNVGQLLKNLSFEL 258
           F GW PHPMN +F ++YLTGGD F+GPDFG ATV T  R+GY QEC NV +LL+NL F++
Sbjct: 192 FQGWAPHPMNAKFDIKYLTGGDKFYGPDFGAATVDTQVRRGYLQECPNVAKLLQNLEFDV 251

Query: 259 KDESTMMGYVLDDKMKPEAAAKKWIKDNPGKLDAWLAGVTTVDGKPGLEAVKAKL 313
           + E+  M  +++  + PE AA + IK  P +L+ WL  V  +DG+ GL  VKA L
Sbjct: 252 EFENKGMDLIMNGGLSPEDAAAQAIKAEPHRLETWLKDVFALDGQNGLATVKAAL 306