Pairwise Alignments

Query, 392 a.a., Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) from Pseudomonas putida KT2440

Subject, 363 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  252 bits (644), Expect = 1e-71
 Identities = 141/283 (49%), Positives = 196/283 (69%), Gaps = 5/283 (1%)

Query: 3   IIRFEDVDVIFSNKPREAL-ALLDQGQTREQILKQTGLVVGVEKANLDINKGEICVLMGL 61
           ++  ++V  IF  +   A+ A+   G +++Q+L+    VVGV  A+L +++GEI  +MGL
Sbjct: 12  LVDCQNVWKIFGARASTAVKAVARGGLSKKQVLEDFDCVVGVCDASLQVHRGEIFCIMGL 71

Query: 62  SGSGKSSLLRCINGLNTVSRGKLFVEHEGKHIDIANCSAAELKMMRTKRIAMVFQKFALM 121
           SGSGKS+L+R +N L   S GK+ V+  GK  DIA  +AAEL+ +R + IAMVFQ  AL+
Sbjct: 72  SGSGKSTLIRLLNRLIEPSLGKITVK--GK--DIARLNAAELRELRARNIAMVFQSVALL 127

Query: 122 PWLTVRENISFGLEMQGRPEKERRKLVDEKLELVGLTQWRNKKPDELSGGMQQRVGLARA 181
           P+ TV EN  F LE++G  + ER ++    LE VGL  W ++ P ELSGGMQQRVGLARA
Sbjct: 128 PYRTVLENAGFSLEVRGVAKDERNRIARAALEKVGLADWTSRYPHELSGGMQQRVGLARA 187

Query: 182 LAMDADILLMDEPFSALDPLIRQGLQDELLGLQAKLSKTIVFVSHDLDEALKLGTRIAIM 241
           LA D +I+LMDEPFSALDPLIR+ LQDE   L   L K+ VF++HDL+EA+++G RIAIM
Sbjct: 188 LAADPEIILMDEPFSALDPLIRRQLQDEFRQLTKSLGKSAVFITHDLEEAIRIGDRIAIM 247

Query: 242 KDGRIIQYSKPEEIVLNPADEYVRTFVAHTNPLNVLCGRSLMR 284
           KDG I+Q    EEIV  PAD+YV  FVA  + ++++   ++M+
Sbjct: 248 KDGVIVQVGTAEEIVTKPADDYVSDFVAGISRIHLVKAHTVMQ 290