Pairwise Alignments

Query, 461 a.a., gamma-aminobutyrate permease from Pseudomonas putida KT2440

Subject, 469 a.a., GABA permease from Pseudomonas simiae WCS417

 Score =  572 bits (1474), Expect = e-168
 Identities = 291/457 (63%), Positives = 351/457 (76%), Gaps = 5/457 (1%)

Query: 1   MSGNNSND----LAQGLKQRHVTMLSIAGVIGAGLFVGSGHAIAAAGPAVLLAYAAAGTL 56
           M+  NSND    LAQG K RHVTMLSIAG+IGAGLFVGSGHAIAAAGPAVLLAY  +GTL
Sbjct: 1   MNSLNSNDSNGQLAQGFKPRHVTMLSIAGIIGAGLFVGSGHAIAAAGPAVLLAYLFSGTL 60

Query: 57  VVLVMRMLGEMAVASPDTGSFSTYADRAIGRWAGFTIGWLYWWFWVLVIPLEANAAAAIL 116
           VVLVMRMLGEMAVA+PDTGSFSTYAD+AIGRWAGFTIGWLYWWFWVLVIP+EA AA  IL
Sbjct: 61  VVLVMRMLGEMAVANPDTGSFSTYADQAIGRWAGFTIGWLYWWFWVLVIPIEALAAGHIL 120

Query: 117 HAWFPAVDLWAFSLIITLALTLTNLCSVKNYGEFEFWFALLKVLAIIGFIAVGCAALFGF 176
           + WFP +D W F+L+    L +TNL SV  YGEFEFWFA+ KV+AII FI +G A L G+
Sbjct: 121 NQWFPQIDAWLFALLSIFLLVVTNLFSVSKYGEFEFWFAMAKVIAIIAFIGLGFAVLMGW 180

Query: 177 VPSSQVSGTSHLFDTQG-FMPNGLGAVLAAMLTTMFSFMGTEIVTIAAAESKDPGKQISR 235
           +P  +VSG S L +  G F PNGL AV+ A +T MFSF+GTE VTIAAAES +P + I+R
Sbjct: 181 IPEREVSGLSRLMEEHGGFAPNGLSAVVGAFITIMFSFIGTEAVTIAAAESSNPAQNIAR 240

Query: 236 ATNSVIWRICLFYLVSIFLVVALVPWNDPALAETGSYQTVLSRIGVPNAKLIVDIVVLIA 295
           AT SV+WRI +FYL+SIF+V+++VPWNDP LA  GSYQ  L  + +P+AKL+VD+VVLIA
Sbjct: 241 ATRSVMWRIGVFYLLSIFVVISVVPWNDPLLASVGSYQRALELMNIPHAKLLVDVVVLIA 300

Query: 296 VTSCLNSALYTSSRMLFSLSKRGDAPAIAQRTTKAATPHVAVLLSTAAAFLCVFANFVAP 355
           V SC+NS++Y +SRMLFSL KRGDAPA+ ++T+ A+ P  AV+ ST         ++ AP
Sbjct: 301 VASCMNSSIYIASRMLFSLGKRGDAPALMKKTSAASVPRAAVIASTILGAGVTLFSYFAP 360

Query: 356 AQVFEFLLASSGAIALLVYLVIAVSQLRMRAQREARGEKITFKMWLFPGLTWATIAFIVA 415
           A +F+FLLASSGAIALLVYLVIAVSQLRMR     R   +TF+MWLFP LTW  IAFI A
Sbjct: 361 AGLFQFLLASSGAIALLVYLVIAVSQLRMRKILRQRNVTLTFQMWLFPWLTWLVIAFICA 420

Query: 416 ILVVMALREDHRAEIIATALLSIGVVAAGLLVHRKRE 452
            L VM +  +HR E+ +T  L++ +   GLL  R+ E
Sbjct: 421 ALTVMLVTPEHRFEVSSTIGLALVISLVGLLTARQPE 457