Pairwise Alignments

Query, 250 a.a., L-arginine ABC transporter - periplasmic binding subunit from Pseudomonas putida KT2440

Subject, 250 a.a., L-lysine and D-lysine ABC transporter, substrate-binding component (from data) from Pseudomonas putida KT2440

 Score =  195 bits (496), Expect = 6e-55
 Identities = 105/244 (43%), Positives = 143/244 (58%), Gaps = 4/244 (1%)

Query: 8   LLAAAATLVMSANAMAAEKLRMGIEAAYPPFNNKDASGNVVGFDKDIGDALCAKMKVECS 67
           LL A A L+  A A +AE LR   E AYPPFN  DA   + GFD DI  ALC +MKVEC+
Sbjct: 7   LLGACALLL--AGAASAETLRFATEGAYPPFNYVDADNKLHGFDVDITHALCEQMKVECT 64

Query: 68  VVTSDWDGIIPALNAKKFDFLVSSLSITDERKQAVDFTNPYYSNKLQFIAPKNVDFKTDK 127
           +V  DW+GIIPAL A+K+D +V+S+  T+ER++ + FT+ YY   L     K+    + +
Sbjct: 65  LVAQDWEGIIPALMARKYDAIVASMIDTEERRKKIAFTDHYYRTPLTVAVAKDSKIDSAQ 124

Query: 128 ESLKGKVIGTQRATLAGTYLEDNY--PDVEIKLYDTQENAYLDLVSGRIDGILADKYVQY 185
               G  +G Q ++    Y ED Y     ++KLY T + A  DL +GR+DG++ADK+  +
Sbjct: 125 TDFVGYTVGAQSSSTQAIYAEDVYGKAGADVKLYPTMDEANADLAAGRLDGVIADKFPLH 184

Query: 186 EWLKSKDGSNFEFKGEPVMDSDKIGIAVRKGDTKLRDDLNKALAEIKADGTYKKINDKYF 245
           EW+    G   +  G+         IAVRK D  LR  LN AL +I A+GTY+KI  KYF
Sbjct: 185 EWMNKNGGDCCKILGDVADTKADAAIAVRKDDEALRQRLNTALQQIVANGTYQKIASKYF 244

Query: 246 PFSI 249
            F I
Sbjct: 245 AFDI 248