Pairwise Alignments

Query, 239 a.a., DNA-binding response regulator from Pseudomonas putida KT2440

Subject, 246 a.a., Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain from Enterobacter asburiae PDN3

 Score =  191 bits (486), Expect = 9e-54
 Identities = 106/234 (45%), Positives = 155/234 (66%), Gaps = 9/234 (3%)

Query: 5   LLVVDDDDEIRELLCDYLTDAGYNVLAAADGQQMRDQLARHKVELVVLDLMLPGEDGLSL 64
           +LVVDDD +IREL+ DYL  +GY    AA+G++MR  L +  ++LVVLD+M+PG+DGL+L
Sbjct: 7   ILVVDDDRDIRELIVDYLGKSGYRATGAANGKEMRVVLDKQHIDLVVLDVMMPGDDGLTL 66

Query: 65  CRQLQA--TPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVLRR--- 119
           CR+L+      L ++ML+A+    DRI+GLE+GADDY+ KPF  REL+ARIKA+LRR   
Sbjct: 67  CRELRVGKYKDLPILMLTARNEETDRILGLEMGADDYVVKPFVARELLARIKAILRRFRT 126

Query: 120 -PQRLGTSAEEPMVDAQLFAGFRLEHVKRLLTRPDGETLTLPRSDYRVLRELLEANNRVV 178
            P  L  +    +V   +F  ++L+ V R L  P+G  + L  ++YR+LR  L+   RV+
Sbjct: 127 MPPNLQVTEAGRLV---MFGEWQLDTVARHLIDPEGVIVALSGAEYRLLRVFLDHPQRVL 183

Query: 179 SRDQLTRSAFGRDHLPDDRSVDMCVSRLRQQLRRAPAGTAQILTIRNEGYLLSL 232
           +RDQL     GRD    +RS+D+ VSR+RQ+L       A I T+R+EGY+ ++
Sbjct: 184 TRDQLLNLTQGRDAELFERSIDLLVSRVRQRLNEDARTPAYIKTVRSEGYVFTM 237