Pairwise Alignments

Query, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

Subject, 439 a.a., porin from Pseudomonas simiae WCS417

 Score =  241 bits (614), Expect = 4e-68
 Identities = 164/459 (35%), Positives = 224/459 (48%), Gaps = 56/459 (12%)

Query: 6   ISLVALAMIAATQAQANDQADSKGFIEDSHANVLLRNAYINRDKKHGTDDQI------EW 59
           +SL A     A  AQ   +    GFIE S  NVL RN Y NRD + G            W
Sbjct: 10  LSLCAALPFTAVAAQDPPE----GFIEGSTVNVLARNFYFNRDDRKGQSSPTGNGYSEAW 65

Query: 60  GQAFIANFSSGFTQGTVGVGVDAFGLYAVRLDGGKGHNGGGGVDFFKPHETTNAEGNASS 119
            Q  I  F SGFTQGTVG G+DAF +  V+LD G G +GG G     P +++N   +   
Sbjct: 66  AQGLIGRFESGFTQGTVGFGLDAFAMVGVKLDSGTGRSGGKGSFGVLPVDSSNHPED--- 122

Query: 120 PHNLARGGAAVKFRISNTVLKYGDQMPALPVLQYDDARLLPESFTGTLITSKEIQGLELN 179
             N ++ G A K R+ +TV+K GD  P  PV+ Y D+R+LPESF G    +  ++GL L 
Sbjct: 123 --NYSKVGGAAKLRVLDTVIKAGDVFPLTPVVAYGDSRVLPESFRGVTAQNTSLEGLSLQ 180

Query: 180 AGRFTQEARKSAERRDGG---------GLKSINVLGGSYKFTDNFTASLYTADNEDVMKK 230
            GR T  ++ +    D G             I   GG Y    N + SLY++  +D   +
Sbjct: 181 GGRLTGMSQPAQSGMDKGFATFYAGPVDSPWIGYFGGDYTVNKNLSFSLYSSRLKDAWDQ 240

Query: 231 HYLGLNYVFPIASDQSLTLDFNGYKSDINNKYVKAAGLNGDSNTIWSLAATYAYGAHSFT 290
           +Y G    +P+  + SL  DFN YK+    K      L    N IWS       GAHS  
Sbjct: 241 YYFGSAARYPLNDEVSLFGDFNYYKAVDEGK----KRLGAFDNNIWSARLGVKVGAHSLA 296

Query: 291 LAHQRSTGSTGYNYGFYQNAGGVGDGGSTIYLANS-YWSDFNAEDERSWQLGYGLDFGAY 349
           ++HQR+ G   ++Y   Q+         +I+L NS  +SDFN+  ERSW + Y LD  A+
Sbjct: 297 VSHQRNNGDDDFDY-LRQS--------DSIFLNNSIQYSDFNSPKERSWMVRYDLDMQAF 347

Query: 350 GIPGLTYKLAYVVGDNINTRN----------VANPQGFGEGKEREIFNQIRYVVQDGPAK 399
           GIPGL++   Y  G   +  N            NP       ER+I  +  YVVQ G  K
Sbjct: 348 GIPGLSFMTRYGKGSGADYSNANAVYMRRDGAGNPLTDQRRWERDI--EASYVVQAGRLK 405

Query: 400 DLSIKLRSSFLRTNNAVQQNGYNDDGNEVRVFVEYPISI 438
           DLS++LR +       V+ + +  D  EVRV VEYPI++
Sbjct: 406 DLSLRLRQA------TVRSSAFESDLEEVRVIVEYPIAV 438