Pairwise Alignments

Query, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

Subject, 432 a.a., porin from Pseudomonas simiae WCS417

 Score =  303 bits (776), Expect = 7e-87
 Identities = 185/450 (41%), Positives = 254/450 (56%), Gaps = 43/450 (9%)

Query: 7   SLVALAMIAATQ--AQANDQADSKGFIEDSHANVLLRNAYINRDKKH-----GTDDQIE- 58
           S++ALA+ A T   A A+ Q+DSKGF+EDS  ++  R  Y +RD ++     G+  + E 
Sbjct: 7   SMIALAVSAGTTQFAMASAQSDSKGFVEDSTFSINTRALYFSRDFRNNPSGPGSQSRAEE 66

Query: 59  WGQAFIANFSSGFTQGTVGVGVDAFGLYAVRLDGGKGHNGGGGVDFFKPHETTNAEGNAS 118
            G  F A + SGFTQGT+GVGVD  GL  V+LD GKG  G G          T ++G + 
Sbjct: 67  TGLGFNALYQSGFTQGTIGVGVDVIGLLGVKLDSGKGRAGTGLFP-------TGSDGRSQ 119

Query: 119 SPHNLARGGAAVKFRISNTVLKYGDQMPALPVLQYDDARLLPESFTGTLITSKEIQGLEL 178
             ++  +GG AVKFRIS+TVLK GDQ    PV   DD+RLLPE   G  ITS EI+GL+L
Sbjct: 120 DDYS--KGGGAVKFRISDTVLKVGDQYTTAPVFASDDSRLLPELPQGISITSNEIKGLKL 177

Query: 179 NAGRFTQEARKSAERRDGGGLKSINVLGGSYKFTDNFTASLYTADNEDVMKKHYLGLNYV 238
             G FT    ++    D  GL   + +GG Y FT  FT SLY A  ED  +K+Y  LN+ 
Sbjct: 178 EGGHFTSSVAQNQTYHDSLGLTKTDFVGGVYSFTPEFTGSLYYAKTEDYFRKYYSNLNWT 237

Query: 239 FPIASDQSLTLDFNGYKSDINNKYVKAAGLNGD---------SNTIWSLAATYAYGAHSF 289
             ++ DQS  LDFN Y +  + + ++ A  +            N  +SL   Y  GAH+F
Sbjct: 238 HALSDDQSFALDFNIYDTKSDGEGLQRAYKDNGLPFAERTKLDNRAFSLQGAYTIGAHTF 297

Query: 290 TLAHQRSTGSTGYNYGFYQNAGGVGDGGSTIYLANSY-WSDFNAEDERSWQLGYGLDFGA 348
           TLA Q+ TG   Y YG         DGG T++LANS   SDFNAE E+S+Q  Y ++   
Sbjct: 298 TLAAQKVTGDGDYGYGV--------DGGGTVFLANSIARSDFNAEGEKSYQARYDINMAT 349

Query: 349 YGIPGLTYKLAYVVGDNINTRNVANPQGFGEGKEREIFNQIRYVVQDGPAKDLSIKLRSS 408
           +GIPGL++   YV G   NT   +N      GKE E   + +YV+Q GPAKDLS+++R +
Sbjct: 350 FGIPGLSFMTRYVTGSGANTATTSN------GKEWERDIEAKYVIQSGPAKDLSLRIRQA 403

Query: 409 FLRTNNAVQQNGYNDDGNEVRVFVEYPISI 438
             R+++ V     + D  E+R+   YP++I
Sbjct: 404 TYRSSDGVYYGSSSID--ELRLIANYPLNI 431