Pairwise Alignments

Query, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

Subject, 420 a.a., porin from Pseudomonas simiae WCS417

 Score =  201 bits (510), Expect = 5e-56
 Identities = 153/447 (34%), Positives = 228/447 (51%), Gaps = 53/447 (11%)

Query: 6   ISLVALAMIAATQAQANDQADSKGFIEDSHANVLLRNAYINRDKKHGTDDQ---IEWGQA 62
           I L+ L  +A T    + QAD  GFIED+ A + LRNAY NR+  + T+ Q    EW Q 
Sbjct: 12  IGLLGLGSLAFT-LPLSVQAD--GFIEDAKATLNLRNAYFNRNFTNPTNPQGKAEEWTQN 68

Query: 63  FIANFSSGFTQGTVGVGVDAFGLYAVRLDGGKGHNGGGGVDFFKPHETTNAEGNASSPHN 122
           FI +  SG+T GTVG G+D  GLY+ +LDGGKG    GG      H    ++G  +   N
Sbjct: 69  FILDAKSGYTTGTVGFGIDVLGLYSQKLDGGKGT---GGTQLLPIH----SDGRPAD--N 119

Query: 123 LARGGAAVKFRISNTVLKYGDQMPALPVLQYDDARLLPESFTGTLITSKEIQGLELNAGR 182
             R G A+K ++S T LK G+ MP LP+L+ DD R LP++F G  +TS EI GL L  G+
Sbjct: 120 FGRLGVALKTKLSKTELKVGEWMPVLPILRSDDGRSLPQTFRGGQVTSNEIAGLTLYGGQ 179

Query: 183 FT-QEARKSAERRD-------GGGLKSINVLGGSYKFTDNFT-ASLYTADNEDVMKKHYL 233
           F     R  A   D              N  GG Y F D  T   ++ A+  D+ ++ Y 
Sbjct: 180 FRGNSPRNDASMEDMFMNGKAAFTSDRFNFGGGEYSFNDKRTQVGVWYAELSDIYQQQYF 239

Query: 234 GLNYVFPIASDQSLTLDFN-GYKSDINNKYVKAAGLNGDSNTIWSLAATYAYGAHSFTLA 292
            L +  P+      TL  N G+ +   +    A  L  D+ T ++L +   Y  ++F + 
Sbjct: 240 NLTHSQPVG---DWTLGANLGFFTGKEDGSALAGDL--DNKTAFALLSA-KYNGNTFYVG 293

Query: 293 HQRSTGSTGYNYGFYQNAGGVGDGGSTIYLAN-SYWSDFNAEDERSWQLGYGLDFGAYGI 351
            Q+ TG +      +    G   G     LAN SY + ++   E+SWQ+ +  +F   GI
Sbjct: 294 LQKLTGDS-----VWMRVNGTSGG----TLANDSYNASYDNAKEKSWQVRHDFNFVVLGI 344

Query: 352 PGLTYKLAYVVGDNINTRNVANPQGFGEGKEREIFNQIRYVVQDGPAKDLSIKLRSSFLR 411
           PGLT    Y+ G N++T  +       +GKE    +++ Y VQ G  KDL+++ R+S +R
Sbjct: 345 PGLTLMNRYISGSNVHTGAIT------DGKEWGRESELAYTVQSGALKDLNVRWRNSTMR 398

Query: 412 TNNAVQQNGYNDDGNEVRVFVEYPISI 438
            + +      N++ +E R+F+ YPIS+
Sbjct: 399 RDFS------NNEFDENRLFISYPISL 419