Pairwise Alignments

Query, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

Subject, 440 a.a., porin from Pseudomonas simiae WCS417

 Score =  294 bits (752), Expect = 4e-84
 Identities = 174/452 (38%), Positives = 257/452 (56%), Gaps = 38/452 (8%)

Query: 7   SLVALAMIAATQAQA-----NDQADSKGFIEDSHANVLLRNAYINRDKKHGTDDQIEWGQ 61
           SL+ALA+ A     A      DQADSKGFIE S    LLRN Y+NR+++ G  D I+W Q
Sbjct: 6   SLLALAVCAGISQMAFAESVTDQADSKGFIEGSSVTGLLRNYYMNRNREGGRADNIDWTQ 65

Query: 62  AFIANFSSGFTQGTVGVGVDAFGLYAVRLDGGKGHNGGGGVDFFKPHETTNAEGNASSPH 121
             + N++SGFTQGT+G GVDA+    ++LD      G G +   +  +  +A G+     
Sbjct: 66  GAMLNYASGFTQGTIGFGVDAYAYGGLKLDATHADAGTGNLPTDRHGDPEDAYGSV---- 121

Query: 122 NLARGGAAVKFRISNTVLKYGDQMPALPVLQYDDARLLPESFTGTLITSKEIQGLELNAG 181
                GAAVK ++S T LK+GD  P  PV      RLLP++ TG  +TS EI GL+L AG
Sbjct: 122 -----GAAVKIKVSKTQLKFGDMQPTAPVFATGGTRLLPQTATGFDLTSSEIAGLDLEAG 176

Query: 182 RFTQEARKSAERRDGG--------GLKSINVLGGSYKFTDNFTASLYTADNEDVMKKHYL 233
            FT          D             S + LGG Y F+ + +A++Y  + ED+ +++Y 
Sbjct: 177 HFTSTNSGMTSNHDHDIYATYANIAANSASFLGGKYTFSPSLSATVYAGELEDIWRQYYT 236

Query: 234 GLNYVFPIASDQSLTLDFNGYKSDINNKYVKAAGLNGDSNTIWSLAATYAY-GAHSFTLA 292
            LNYV P+  DQSL LD N Y++ ++    KA  +N   NT +SLAA Y++  AH+ TL+
Sbjct: 237 NLNYVIPLVHDQSLALDGNLYRT-LDTGSAKAGAIN---NTTYSLAAAYSFLQAHTLTLS 292

Query: 293 HQRSTGSTGYNYGFYQNAGGVGDGGSTIYLANS-YWSDFNAEDERSWQLGYGLDFGAYGI 351
            Q+  G T ++Y    N  G G+GG ++YLANS  W DFN   E+SW + Y L+  +YG+
Sbjct: 293 FQKVHGDTPFDYIGTGN-NGAGEGGDSVYLANSVQWGDFNGPGEQSWGIRYDLNMASYGV 351

Query: 352 PGLTYKLAYVVGDNINTRNVANPQGFG-----EGKEREIFNQIRYVVQDGPAKDLSIKLR 406
           PGL++   Y+ G +IN  +  +   +      +G   E   + +YV+Q GPAK+LS+++R
Sbjct: 352 PGLSFMGRYINGSDINGTHTPDHSAYAGDYGDDGAHHETDLEAKYVIQSGPAKNLSLRVR 411

Query: 407 SSFLRTNNAVQQNGYNDDGNEVRVFVEYPISI 438
            + +   NA Q++G   D NE+R+ V+YP ++
Sbjct: 412 DAIVAA-NADQRDG---DLNELRLIVDYPFTL 439