Pairwise Alignments

Query, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

Subject, 438 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  554 bits (1427), Expect = e-162
 Identities = 272/445 (61%), Positives = 342/445 (76%), Gaps = 13/445 (2%)

Query: 1   MLKTRISLVALAMIAATQAQANDQADSKGFIEDSHANVLLRNAYINRDKKHGTDDQIEWG 60
           MLK R+SL+AL +++A+ A ANDQ  SKGFIEDSH N+  RNAYI+RD K+G  D+ EWG
Sbjct: 1   MLKQRMSLIALGILSASTAMANDQDQSKGFIEDSHLNIAARNAYISRDYKNGKQDKAEWG 60

Query: 61  QAFIANFSSGFTQGTVGVGVDAFGLYAVRLDGGKGHNGGGGVDFFKP-HETTNAEGN--- 116
           Q FI    SGFTQGTVGVGVD  G YA+RLDGGKG  G GG+DFFK  + TTN +G+   
Sbjct: 61  QGFIGKLESGFTQGTVGVGVDVIGQYAIRLDGGKGRAGAGGIDFFKQGNGTTNPDGSNNP 120

Query: 117 ASSPHNLARGGAAVKFRISNTVLKYGDQMPALPVLQYDDARLLPESFTGTLITSKEIQGL 176
            S+PH+LA+GGAAVKFR+SNTVLKYGDQ PA+PVLQYD++RLL E++TGT I SKEI GL
Sbjct: 121 GSAPHDLAKGGAAVKFRVSNTVLKYGDQFPAVPVLQYDNSRLLSETYTGTSIVSKEIAGL 180

Query: 177 ELNAGRFTQEARKSAERRDGGGLKSINVLGGSYKFTDNFTASLYTADNEDVMKKHYLGLN 236
           +L+AG FT+EARKS E  D G LKSI+ +GGSYKFT++ +A+LY +D +DV+KK Y+ +N
Sbjct: 181 QLDAGHFTKEARKSMEGTDSGRLKSIDYIGGSYKFTESLSAALYASDMQDVLKKQYVNVN 240

Query: 237 YVFPIASDQSLTLDFNGYKSDINNKYVKAAGLNGDS--NTIWSLAATYAYGAHSFTLAHQ 294
           YV  +   QSLT DFNGYK+ ++  +      + D+  N IWSL AT+A G HSFT+AHQ
Sbjct: 241 YVLALPEKQSLTFDFNGYKTKLDRSFALENQKDADARDNKIWSLGATWAVGPHSFTVAHQ 300

Query: 295 RSTGSTGYNYGFYQNAGGVGDGGSTIYLANSYWSDFNAEDERSWQLGYGLDFGAYGIPGL 354
           RSTG TGY YG Y+NAGG+GDGG+TI LANSYWSDFN +DERSWQLGYG+DF  +G+PGL
Sbjct: 301 RSTGDTGYLYGGYRNAGGIGDGGNTILLANSYWSDFNGKDERSWQLGYGIDFATFGVPGL 360

Query: 355 TYKLAYVVGDNINTRNVANPQGFGEGKEREIFNQIRYVVQDGPAKDLSIKLRSSFLRTNN 414
           TY +AYV G NI+     +    G+G EREI+NQ +YVVQ GPAKDLS++ R+S+LR +N
Sbjct: 361 TYNVAYVRGTNID-----DGTNRGDGTEREIWNQFKYVVQSGPAKDLSLRARASWLRVSN 415

Query: 415 AVQQNGYNDDGNEVRVFVEYPISIF 439
              Q  YN  GNE+R+F +YPI++F
Sbjct: 416 NADQ--YNVGGNEIRLFADYPINVF 438