Pairwise Alignments

Query, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

Subject, 427 a.a., porin from Pseudomonas simiae WCS417

 Score =  197 bits (501), Expect = 5e-55
 Identities = 142/434 (32%), Positives = 209/434 (48%), Gaps = 50/434 (11%)

Query: 24  QADSKGFIEDSHANVLLRNAYINRDKKH--GTDDQIEWGQAFIANFSSGFTQGTVGVGVD 81
           QAD   FI+DS A++ L+N Y NRD +   G   + EW Q FI N  SGFT+GTVG GVD
Sbjct: 26  QAD---FIKDSKADLDLKNYYFNRDYREDAGQSKREEWAQGFILNLKSGFTEGTVGFGVD 82

Query: 82  AFGLYAVRLDGGKGHNGGGGVDFFKPHETTNAEGNAS--SPHNLARGGAAVKFRISNTVL 139
             G+  ++LD     +G G +   + ++ T  + + S  +    ++ G   K R + + L
Sbjct: 83  VVGMLGLKLDSSPDRSGSGLLS--RDNDATPGKPSYSKRAHDEYSKYGVTGKVRFAQSEL 140

Query: 140 KYGDQMPALPVLQYDDARLLPESFTGTLITSKEIQGLELNAGRFTQ-EARKSAERRD--- 195
           + G  +P LP LQ + +RL P++F GT +TS +I GL L  G+  Q + R+S E  D   
Sbjct: 141 RSGYLLPDLPTLQPNTSRLFPQTFRGTQVTSTDIAGLALIGGQIDQTKQRESTEYEDMGL 200

Query: 196 ---GGGLKS------INVLGGSYKFTDNFTASLYTADNEDVMKKHYLGLNYVFPIASDQS 246
               G  KS          GG YK T   T S + A  ED+ ++H++GL   F +    +
Sbjct: 201 TSQSGAYKSTAKSDRFRFAGGDYKLTPGMTLSYHFAQLEDIYQQHFVGLKNSFALGGG-T 259

Query: 247 LTLDFNGYKSDINNKYVKAAGLNGD-SNTIWSLAATYAYGAHSFTLAHQRSTGSTGYNYG 305
           L  D   + +D        AGL G   N   S  A ++Y  HS    +Q   G T + Y 
Sbjct: 260 LKTDIRYFDAD-----KSGAGLAGKVDNRALSTRAMFSYKGHSLGGGYQEQYGDTPFTY- 313

Query: 306 FYQNAGGVGDGGSTIYLANSYWSDFNAEDERSWQLGYGLDFGAYGIPGLTYKLAYVVGDN 365
                    DG +T   +    S+F+  +ER W   Y  DF A G+PGLT+   +  GD 
Sbjct: 314 --------VDGTNTYLFSEYQLSNFSQTNERVWHARYDFDFAALGVPGLTFSTRWAKGDQ 365

Query: 366 INTRNVANPQGFGEGKEREIFNQIRYVVQDGPAKDLSIKLRSSFLRTNNAVQQNGYNDDG 425
              +  A     GEG+E E    + YV Q G  K +S++ R+   + N       Y  D 
Sbjct: 366 AQVKGFA-----GEGREWERDIDLGYVFQSGTLKGVSLRWRNGLSKAN-------YLRDM 413

Query: 426 NEVRVFVEYPISIF 439
           NE RV V Y ++++
Sbjct: 414 NENRVIVGYTVALW 427