Pairwise Alignments

Query, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

Subject, 417 a.a., phenylacetic acid-specific porin from Pseudomonas putida KT2440

 Score =  204 bits (518), Expect = 6e-57
 Identities = 142/419 (33%), Positives = 204/419 (48%), Gaps = 42/419 (10%)

Query: 30  FIEDSHANVLLRNAYINRDKKHGTDDQI---EWGQAFIANFSSGFTQGTVGVGVDAFGLY 86
           FI DSHA + LRN YINRD +     Q    EWGQ F A   SGFT+G VG GVDA G  
Sbjct: 32  FIGDSHARLELRNHYINRDFRQSNAPQAKAEEWGQGFTAKLESGFTEGPVGFGVDALGQL 91

Query: 87  AVRLDGGKGHNGGGGVDFF-KPHETTNAEGNASSPHNLARGGAAVKFRISNTVLKYGDQM 145
            ++LD  +     G + F    HE  +         + +  G   K R+S + L+ G   
Sbjct: 92  GIKLDSSRDRRNTGLLPFGPNSHEPVD---------DYSELGLTGKVRVSKSTLRLGTLQ 142

Query: 146 PALPVLQYDDARLLPESFTGTLITSKEIQGLELNAGRFTQEARKSAERRD--GGGLKSIN 203
           P LPV+ Y+D RLL  SF G L+TS+++ GL  NAGR T+   + +  RD  G G  S +
Sbjct: 143 PILPVVVYNDTRLLASSFQGGLLTSQDLDGLTFNAGRLTKANLRDSSGRDDIGYGAASSD 202

Query: 204 VL---GGSYKFTDNFTASLYTADNEDVMKKHYLGLNYVFPIASDQSLTLDFNGYKSDINN 260
            L   GGSY  T   T S Y A  +D+ ++ ++GL    P+A   SL  D   +  D  N
Sbjct: 203 HLDFGGGSYAITPQTTVSYYYAKLQDIYRQQFVGLIDTRPLAEGVSLRSDLRYF--DSRN 260

Query: 261 KYVKAAGLNGDSNTIWSLAATYAYGAHSFTLAHQRSTGSTGYNYGFYQNAGGVGDGGSTI 320
              + AG     N  ++   T    AH FT   Q+ +G + + +          +GG   
Sbjct: 261 DGAERAG--NIDNRNFNAMFTLGVRAHKFTATWQQMSGDSAFPF---------VNGGDPF 309

Query: 321 YLANSYWSDFNAEDERSWQLGYGLDFGAYGIPGLTYKLAYVVGDNINTRNVANPQGFGEG 380
            +    ++ F      SWQ+ Y  DF A GIPGL++   Y  G +  T  V N      G
Sbjct: 310 TVNLVTYNTFTRAGLDSWQVRYDYDFVAMGIPGLSFMTRYTDGRHAETATVTN------G 363

Query: 381 KEREIFNQIRYVVQDGPAKDLSIKLRSSFLRTNNAVQQNGYNDDGNEVRVFVEYPISIF 439
           +ERE    I YV+Q GP KD+S++ R+   R+      NG  +  +E R+ + Y ++++
Sbjct: 364 RERERDTDITYVIQSGPFKDVSLRWRNVTFRSG-----NGLTNAVDENRLIIGYTLALW 417