Pairwise Alignments

Query, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

Subject, 449 a.a., putative OprD family outer membrane porin from Pseudomonas putida KT2440

 Score =  218 bits (556), Expect = 2e-61
 Identities = 148/456 (32%), Positives = 230/456 (50%), Gaps = 45/456 (9%)

Query: 9   VALAMIAATQAQANDQADSKGFIEDSHANVLLRNAYINRDKKHGTDD-----------QI 57
           ++LA++ A+ A A+  +D +GFI+ +  +VL RN + ++D ++G                
Sbjct: 11  LSLAILLASPAFAD--SDDEGFIDGTRVHVLNRNFFFSQDYRNGDFTLNPNNGERQSLHR 68

Query: 58  EWGQAFIANFSSGFTQGTVGVGVDAFGLYAVRLDGGKGHNGGG-GVDFFKPHETTNAEGN 116
           EWG   IAN  SGFT+GTVG GVD  GL  ++LDGG G  G G GV        +N +G 
Sbjct: 69  EWGHGIIANLQSGFTRGTVGFGVDVQGLVGLKLDGGNGAVGNGVGVPGIVSRSGSNFDGE 128

Query: 117 ASSPHNLARGGAAVKFRISNTVLKYGDQMPALPVLQYDDARLLPESFTGTLITSKEIQGL 176
               +   + G A+K R  +T L+YGD  P  PVL   D RLLP++  G +  +  + GL
Sbjct: 129 PKDSY--GKVGTALKVRAFDTELRYGDVSPTSPVLHASDIRLLPQTLRGFIFNNNSLDGL 186

Query: 177 ELNAGRFTQEARKSAERRDG-------GGLKSIN---VLGGSYKFTDNFTASLYTADNED 226
            L  G+    + ++A    G       G +K  N    LGG Y+F D  T  L+++  +D
Sbjct: 187 SLQGGKLESSSDRNASNHRGDLGTVYAGRIKGANDVVYLGGDYRFNDQLTLRLHSSRLDD 246

Query: 227 VMKKHYLGLNYVFPIASDQSLTLDFNGYKSDINNKYVKAAGLNGDSNTIWSLAATYAYGA 286
           V  + +  +++V P+ S+ SL    N Y++  + + + A  ++ DS   WS+ A  A GA
Sbjct: 247 VWNQSFFSVDHVQPLGSELSLKTGLNYYRTRDSGQAL-AGQIDNDS---WSVHAGLAAGA 302

Query: 287 HSFTLAHQRSTGSTGYNYGFYQNAGGVGDGGSTIYLANSYWSDFNAEDERSWQLGYGLDF 346
           H F L++ R  G T ++Y        V +       A S  SDFN  +ER+W+  Y  DF
Sbjct: 303 HGFKLSYTRIDGDTPFDY--------VWNTYDLQLDAASQVSDFNNPNERAWEARYDYDF 354

Query: 347 GAYGIPGLTYKLAYVVGDNINTRNVANP----QGFGEGKEREIFNQIRYVVQDGPAKDLS 402
              G+PGL+    YV G +I+            G  +G+  E    ++YV+Q GPAKDLS
Sbjct: 355 APLGVPGLSLTARYVRGTDIDGTRAGGAYSYFNGTEDGRHWERNLWLKYVLQSGPAKDLS 414

Query: 403 IKLRSSFLRTNNAVQQNGYNDDGNEVRVFVEYPISI 438
             L  +   T+     +    + +E+R+ V+YP+ I
Sbjct: 415 FNLMQA---THRVGGDHVAESNVDELRLIVQYPLDI 447