Pairwise Alignments

Query, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

Subject, 429 a.a., tricarboxylate-specific outer membrane porin from Pseudomonas putida KT2440

 Score =  221 bits (563), Expect = 3e-62
 Identities = 156/453 (34%), Positives = 227/453 (50%), Gaps = 59/453 (13%)

Query: 5   RISLVALAMIAATQAQANDQADSKGFIEDSHANVLLRNAYINRDKKHGTDDQI----EWG 60
           R S +A A+  A  A  +  A    F EDS A    RN Y NRD + GT  Q     EW 
Sbjct: 18  RPSAIASALALAGVAPMSQAA----FFEDSTATFETRNMYFNRDFRDGTSAQQSKRDEWA 73

Query: 61  QAFIANFSSGFTQGTVGVGVDAFGLYAVRLDGGKGHNGGGGVDFFKPHETTNAEGNASSP 120
           Q FI NF SG+T GTVG G+DA G+  ++LD        G +        T+ +G A+  
Sbjct: 74  QGFILNFESGYTDGTVGFGLDALGMLGIKLDSSPDRTDSGLLP-------THDDGKAADE 126

Query: 121 HNLARGGAAVKFRISNTVLKYGDQMPALPVLQYDDARLLPESFTGTLITSKEIQGLELNA 180
           ++  + G   K +IS T LK G  +P LP LQ +D R+LP++F G L+TSKEI+GL    
Sbjct: 127 YS--KLGLTGKVKISQTELKIGTLIPELPTLQPNDGRILPQTFEGGLLTSKEIKGLTFTG 184

Query: 181 GRFTQE-----------ARKSAERRDGGGLKSINV-LGG-SYKFTDNFTASLYTADNEDV 227
           GR  +            A  +   R GG   + N+ LGG  Y+FTD  T S + A  +D+
Sbjct: 185 GRIDKAKDRNDTNWEDLALNNKNGRFGGTFSADNLALGGLDYQFTDRITGSYHFAQLDDI 244

Query: 228 MKKHYLGLNYVFPIASDQSLTLDFNGYKSDINNKYVKAAGLNGDSNTIWSLAATYAYGAH 287
            ++H++G+    P     +L  D     SD       AA      NT  +   +YA G H
Sbjct: 245 YRQHFIGMVATQPWGPG-TLGADLRLAMSD----DAGAAKAGNIDNTTVNGMLSYALGGH 299

Query: 288 SFTLAHQRSTGSTGYNYGFYQNAGGVGDGGSTIYLANSYW-SDFNAEDERSWQLGYGLDF 346
             + A Q+ +G + + Y            G+  YL N    +DF   DERSWQ  Y  +F
Sbjct: 300 KVSAAWQQLSGESAFPY----------VDGADPYLVNFVQINDFAGADERSWQARYDYNF 349

Query: 347 GAYGIPGLTYKLAYVVGDNINTRNVANPQGFGEGKEREIFNQIRYVVQDGPAKDLSIKLR 406
            A G+PGLT+   Y+ GDN++          GEGKE E   +++YVVQ GP K+++++LR
Sbjct: 350 AALGVPGLTFMTRYISGDNVSR------AAGGEGKEWERNTELKYVVQSGPLKNVAVRLR 403

Query: 407 SSFLRTNNAVQQNGYNDDGNEVRVFVEYPISIF 439
           ++  R+N       +  D +EVR+ V Y ++++
Sbjct: 404 NATFRSN-------FARDADEVRLLVSYSVALW 429