Pairwise Alignments

Query, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

Subject, 418 a.a., porin-like protein from Pseudomonas putida KT2440

 Score =  211 bits (537), Expect = 3e-59
 Identities = 161/450 (35%), Positives = 221/450 (49%), Gaps = 69/450 (15%)

Query: 11  LAMIAATQAQANDQADSKGFIEDSHANVLLRNAYINR---DKKHGTDDQIEWGQAFIANF 67
           LAM  A  A A   A+  GFIED+ A + LRN YINR   D  H      EW Q+FI + 
Sbjct: 15  LAMSCALPAFA---ANEGGFIEDAKATLNLRNFYINRNFVDPAHPQGKAEEWTQSFILDA 71

Query: 68  SSGFTQGTVGVGVDAFGLYAVRLDGGKGHNGGGGVDFFKPHETTNAE-----GNASSPHN 122
            SGFTQGTVG GVD  GLY+V+LDGGKG              TTN       G+     +
Sbjct: 72  RSGFTQGTVGFGVDVLGLYSVKLDGGKG--------------TTNTHLLPVHGDGRPADD 117

Query: 123 LARGGAAVKFRISNTVLKYGDQMPALPVLQYDDARLLPESFTGTLITSKEIQGLELNAGR 182
             R G A+K ++S T LK G+ MP LP+L+ DD R LP++F G  +TS+EI GL L AG+
Sbjct: 118 FGRLGVALKAKLSETELKVGEWMPVLPILRSDDGRSLPQTFRGGQLTSREIAGLTLYAGQ 177

Query: 183 FTQEARKSAERRDGGGLKS--------INVLGGSYKFTDNFT-ASLYTADNEDVMKKHYL 233
           F   + ++    +   L           N  GG Y F D  T   L+ A  +D+ ++ YL
Sbjct: 178 FRGNSPRNDASMEDMSLNGKAAFTSDRFNFGGGEYTFNDKRTMIGLWDAQLKDIYRQQYL 237

Query: 234 GLNYVFPIASDQSLTLDFN-GYKSDINNKYVKAAGLNGDSNTIWSLAATYAYGAHSFTLA 292
            L +  P+      TL  N GY     +   +A  L+   N   S   +  Y  H+F + 
Sbjct: 238 NLTHSQPLG---DWTLGANLGYFIGKEDGAERAGKLD---NRTASALLSARYQGHTFYVG 291

Query: 293 HQRSTGSTGYNYGFYQNAGGVGDGGSTIYLAN-SYWSDFNAEDERSWQLGYGLDFGAYGI 351
            Q+ +G        +    G   G     LAN SY S F+   ERSWQ+ +  +F   G+
Sbjct: 292 LQKVSGDDA-----WMRVNGTSGG----TLANDSYNSSFDNAKERSWQVRHDFNFATVGV 342

Query: 352 PGLTYKLAYVVGDNINTRNVANPQGFGEGKEREIFNQIRYVVQDGPAKDLSIKLRSSFLR 411
           PGLT    Y+ GDN+   +V       +GKE     ++ YVVQ G  KDLS+K R+S +R
Sbjct: 343 PGLTLMNRYIKGDNVTVGSV------DDGKEWARETELAYVVQSGSFKDLSLKWRNSTMR 396

Query: 412 ---TNNAVQQNGYNDDGNEVRVFVEYPISI 438
              + NA  +N         R+ V YP+++
Sbjct: 397 RDFSTNAFDEN---------RLIVSYPLNL 417