Pairwise Alignments

Query, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

Subject, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

 Score =  347 bits (889), Expect = e-100
 Identities = 208/442 (47%), Positives = 271/442 (61%), Gaps = 38/442 (8%)

Query: 7   SLVALAMIAATQ--AQANDQADSKGFIEDSHANVLLRNAYINRDKKH---GTDDQIEWGQ 61
           S++ALA+ A T   A A+ Q +SKGFIEDS  +V  R  Y +RD ++   G   + E G 
Sbjct: 7   SMIALAVSAGTSQLAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRNNEGGQSRREETGL 66

Query: 62  AFIANFSSGFTQGTVGVGVDAFGLYAVRLDGGKGHNGGGGVDFFKPHETTNAEGNASSPH 121
            F+  F SGFTQGTVGVGVDA G+  ++LD GKG  G G          T ++G +   +
Sbjct: 67  GFVGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGTGLFP-------TGSDGRSQDDY 119

Query: 122 NLARGGAAVKFRISNTVLKYGDQMPALPVLQYDDARLLPESFTGTLITSKEIQGLELNAG 181
           +  +GG AVKFRIS+TVLK GDQ  ALPV   DD+RLLPE   GTLITS EI+GL L+AG
Sbjct: 120 S--KGGGAVKFRISDTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAG 177

Query: 182 RFTQEARKSAERRDGGGLKSINVLGGSYKFTDNFTASLYTADNEDVMKKHYLGLNYVFPI 241
            FT    +    RD  GLK  NV+GG+Y FTDN + SLY +  ED  +K+Y  +N+  PI
Sbjct: 178 HFTSLTAQEQTNRDSFGLKEANVVGGTYAFTDNLSTSLYYSKVEDYWRKYYANVNWALPI 237

Query: 242 ASDQSLTLDFNGY--KSDINNKYVKAAGLNGD--SNTIWSLAATYAYGAHSFTLAHQRST 297
           + +Q L  DFN Y  KS+ + +Y      +GD   N  +SL+  Y  GAH+FTLA+Q+ T
Sbjct: 238 SDNQGLVFDFNIYDTKSEGSAEY---RAFDGDKLDNRAFSLSGAYNIGAHTFTLAYQKVT 294

Query: 298 GSTGYNYGFYQNAGGVGDGGSTIYLANSY-WSDFNAEDERSWQLGYGLDFGAYGIPGLTY 356
           G   Y YG         DGG TI+LANS   SDFNAEDE+SWQ  Y L+F  YGIPGLT+
Sbjct: 295 GDGDYGYGI--------DGGGTIFLANSVARSDFNAEDEKSWQARYDLNFAEYGIPGLTF 346

Query: 357 KLAYVVGDNINTRNVANPQGFGEGKEREIFNQIRYVVQDGPAKDLSIKLRSSFLRTNNAV 416
              YV G +      AN  G   GKE E    I+YV+Q+GPAKDLS ++R +  R+++ V
Sbjct: 347 MTRYVRGSD------ANVAGTSNGKEWERDVDIKYVLQEGPAKDLSFRVRQATYRSSDGV 400

Query: 417 QQNGYNDDGNEVRVFVEYPISI 438
             +  + D  E+R+ VEYP+SI
Sbjct: 401 YYDSPSID--ELRLIVEYPLSI 420