Pairwise Alignments

Query, 861 a.a., putative transcriptional accessory protein from Pseudomonas putida KT2440

Subject, 561 a.a., 30S ribosomal protein S1 from Pseudomonas simiae WCS417

 Score = 67.4 bits (163), Expect = 2e-15
 Identities = 33/76 (43%), Positives = 52/76 (68%), Gaps = 1/76 (1%)

Query: 730 LKDLEPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVK 789
           L+ L+ G  ++G+V N+T++GAFVD+G   DGL+HI+ ++ K +K P E V  GD + VK
Sbjct: 188 LESLQEGQQVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRIKHPSEIVNVGDEIDVK 246

Query: 790 VMEVDIPRKRVGLSMR 805
           V++ D  R RV L ++
Sbjct: 247 VLKYDRERNRVSLGLK 262



 Score = 48.1 bits (113), Expect = 1e-09
 Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 743 VTNVTNFGAFVDIGVHQDGLVHISAL--SEKFVKDPREAVKAGDVVKVKVMEVDIPRKRV 800
           VTN+T++G F ++    +GLVH+S +  + K +  P + V+ GD V+V V+++D  R+R+
Sbjct: 286 VTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNI-HPSKVVQVGDEVEVMVLDIDEERRRI 344

Query: 801 GLSMRM-SDTPGEKVEG--NRG 819
            L ++     P E   G  N+G
Sbjct: 345 SLGIKQCKSNPWEDFSGQFNKG 366



 Score = 45.1 bits (105), Expect = 1e-08
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 7/87 (8%)

Query: 739 LEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAV---KAGDVVKVKVMEVDI 795
           + G + ++T+FG F+ +    DGLVH+S +S   V +  EAV   K GD +   ++ VD 
Sbjct: 369 ISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGE--EAVRRFKKGDELDTVILSVDP 426

Query: 796 PRKRVGLSMRM--SDTPGEKVEGNRGG 820
            R+R+ L ++   SD   E V+ N  G
Sbjct: 427 ERERISLGIKQLESDPFSEYVQENDKG 453