Pairwise Alignments

Query, 861 a.a., putative transcriptional accessory protein from Pseudomonas putida KT2440

Subject, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

 Score =  837 bits (2163), Expect = 0.0
 Identities = 451/795 (56%), Positives = 560/795 (70%), Gaps = 26/795 (3%)

Query: 88  MDSINSRIAEELGVRPQQVEAAVSLLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRY 147
           M  I  ++A E+ V   QV+AAV LLD G+TVPFIARYRKE T  LDDTQLR LE RL Y
Sbjct: 1   MQKIIRQLAAEIKVGENQVKAAVELLDGGATVPFIARYRKEATDGLDDTQLRELEARLSY 60

Query: 148 LRELDERRASILSSIEEQGKLTPELAREIKLADTKTRLEDLYLPYKQKRRTKGQIALEAG 207
           LREL++RR ++L +I+EQGKLTPEL   I+ A TK  LED+YLP+KQKRRTKGQIA E G
Sbjct: 61  LRELEDRRVAVLKAIDEQGKLTPELRAAIEFAPTKQELEDIYLPFKQKRRTKGQIAREFG 120

Query: 208 LGELADGLFNDPTLAPESEAARFVNAEKGVAD---------VKAALEGAKYILMERFAED 258
           +  LAD L  DPTL P  EA  F+     + D         V   L+G + IL ER+AED
Sbjct: 121 IEPLADKLLADPTLDPAVEAKAFLQPATTLDDGKPGPDFSTVPLVLDGVRDILSERWAED 180

Query: 259 AALLDKLRSYLKQEAVLSARVVAGKEEEGA---KFRDYFAHDELLRTAPSHRALAIFRGR 315
           AAL+  LR +L  E +L + +++GK+E  A   KFRDYF +DE +   PSHRALA+FRGR
Sbjct: 181 AALVQSLRVWLWNEGLLKSSLMSGKDENNADVAKFRDYFEYDEPIGRVPSHRALAVFRGR 240

Query: 316 NEGVLSVSLKVG-EELPGTLHPCELMIGNHVGIENRSRPADKWLGEVVRWTWKVKLYTHL 374
              +L   L +  E  PG     E  I  H+G  +  RPAD  L + V WTW+VKL    
Sbjct: 241 ALDILDAKLVLPVEPEPGKPSVAEGRIALHLGWSHAGRPADDLLRKCVAWTWRVKLALST 300

Query: 375 ETDLFGELRDSAEGEAINVFAHNLHDLLLAAPAGPRATLGFDPGLRTGCKIAVVDATGKL 434
           E DLF  LR+ AE  AI VFA NL DLLLAAPAGPR  +G DPG+RTG K+AVVD+TGKL
Sbjct: 301 ERDLFTRLREDAEKVAIKVFADNLRDLLLAAPAGPRVVMGLDPGIRTGVKVAVVDSTGKL 360

Query: 435 LDHTTVYPHAPKNDWDRTISIMAALCAKHSVELIAIGNGTASRESDKLVTELVKKY---- 490
           ++  TV+PH P+ DW+ ++  +  LCAKH V LIAIGNGTASRE+DKL  +L+K      
Sbjct: 361 VETATVFPHEPRKDWEGSLHTLGKLCAKHGVNLIAIGNGTASRETDKLAADLIKLLAKMA 420

Query: 491 -----PALKITKIMVSEAGASVYSASELAAREFPDLDVSIRGAVSIARRLQDPLAELVKI 545
                P +++ K++VSEAGASVYSASE A++E PD+DVS+RGA SIARRLQDPLAELVKI
Sbjct: 421 AQAGAPEIQVDKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAELVKI 480

Query: 546 DPKSIGVGQYQHDVSQLKLARGLDAVVEDCVNAVGVDVNTASVALLTRISGLNATLAQNI 605
           DPKSIGVGQYQHDV+Q +LAR L AVVEDCVN+VGVD+NTASV LL+R+SGL+A++A+ +
Sbjct: 481 DPKSIGVGQYQHDVNQSELARTLQAVVEDCVNSVGVDLNTASVPLLSRVSGLSASVAKAV 540

Query: 606 VAHRDANGPFATRAALKKVSRLGEKTFEQAAGFLRVMNGDNPLDASAVHPEAYPLVQRIA 665
           V  R++NG FATR  L  V+  G K FEQ+AGFLR+  G +PLD + VHPE YPLV++I 
Sbjct: 541 VRWRESNGAFATRKQLLDVTGFGPKAFEQSAGFLRIRGGTDPLDVTGVHPETYPLVEQII 600

Query: 666 ADTDRDIRSLIGDSSFLKRLDPKKFTDETFGLPTVTDILQELDKPGRDPRPEFKTATFQD 725
             T + I  L+G +  LK L P+ F +E FG+ TV DIL EL+KPGRDPRP+FK A F D
Sbjct: 601 VKTGKPIAELMGRAEMLKTLKPELFANEKFGVITVKDILGELEKPGRDPRPDFKVARFND 660

Query: 726 GVEDLKDLEPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDV 785
           GV+D+ DL+ GMILEG V+NV  FGAFVD+GVHQDGLVH+S LS KFV D RE VK GD+
Sbjct: 661 GVDDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDI 720

Query: 786 VKVKVMEVDIPRKRVGLSMRMSDTPGEKVEGNRGGNRGNGGNRQQQAPRQRETATAAPAN 845
           VKVKVMEVD+ RKR+GLSM++   P  + +G R  NR  G  R QQ   +R+  +  PA 
Sbjct: 721 VKVKVMEVDVARKRIGLSMKLDAAPARR-DGPR-DNRFEGAGRGQQQQGRRDN-SPQPAG 777

Query: 846 NAMAALFANAKQLKK 860
             MA+ FA  + L+K
Sbjct: 778 Q-MASAFAKLQGLRK 791