Pairwise Alignments

Query, 321 a.a., aliphatic sulfonate ABC transporter - periplasmic binding protein / transport of isethionate from Pseudomonas putida KT2440

Subject, 329 a.a., ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) from Variovorax sp. SCN45

 Score =  123 bits (309), Expect = 5e-33
 Identities = 93/314 (29%), Positives = 145/314 (46%), Gaps = 11/314 (3%)

Query: 2   RTVFLRRGLVALFAAAVSFGA-ITQAQAES-LRIGYQKYGTLVLLKAKGTLEKRLAEQGV 59
           R  +L++G     AAA S  A   QAQ ++ L +G Q  G   L +A   LE        
Sbjct: 11  RRDWLKQGTALSLAAAGSLRASFAQAQPQTTLVLGDQAGGLRSLFEASRALEGA----PF 66

Query: 60  QVQWTEFPGGPQLLEGLNVGSIDFGVTGETPPVFAQAAGADLLYVAYEPPAPHSEAILVP 119
             +W  F G   L E     ++D  + G+ P + A      L  VA       S  I+V 
Sbjct: 67  AYRWANFQGAAPLFEAQRGAAVDTAMAGDLPVLAAAVGKTPLKIVATRVGKADSLGIVVQ 126

Query: 120 KGSPIQSVKDLKGKKVVLN--KGSNVHYLLVRALEDAGLKYSDIQPVYLPPADARAAFER 177
             SP++SV DL+GK V+++  +GS   Y L  ALE+AG+K  ++   ++ P DA AAF  
Sbjct: 127 PDSPLRSVTDLRGKTVIVSSARGSISQYQLYGALEEAGVKREEVTVKFVLPTDAAAAFAS 186

Query: 178 GSVDAWVIWDPYQAAAEQQLQARTLRDGKGLVDNHQFYLATRNYATQ--HPAVINTVIEE 235
             +DAW I++PY   A QQ   R LRDG+G+     F  A+ +        A I   ++ 
Sbjct: 187 RQIDAWAIFNPYYTIAVQQ-GGRILRDGRGINTALGFITASEHSLADPARRAAIVQFLDR 245

Query: 236 VRAVGEWSQANPQEVTDQVAPLLGLPAGITLTSVKRQGYGAAPLTPEVVAAQQKIADTFQ 295
           +   G+W+ ANP+      + L  LP   +     R      P++   + A Q +AD   
Sbjct: 246 LGRAGDWALANPEAYAQSYSQLTRLPIEASRIITARASVAGRPVSEADIVALQAVADRSA 305

Query: 296 ALKLIPKPLSIKDV 309
              ++P  + ++ +
Sbjct: 306 RDGILPARVDVRAI 319