Pairwise Alignments

Query, 444 a.a., outer-membrane porin E from Pseudomonas putida KT2440

Subject, 438 a.a., porin from Pseudomonas simiae WCS417

 Score =  375 bits (963), Expect = e-108
 Identities = 210/454 (46%), Positives = 285/454 (62%), Gaps = 37/454 (8%)

Query: 2   YKSSLALAVALGVLAQQAGAAGFVEDSKLSLSSRTMYFNDDNRES-GIDQKESGQGFKLD 60
           +K+ LALAV+LG  AQQA A+GF++DSK SL  R  Y+N D R +     KE GQ F  +
Sbjct: 3   HKTCLALAVSLGA-AQQAAASGFIDDSKASLDLRNFYYNQDTRNAKAASDKEWGQAFMFN 61

Query: 61  YLSGFTQGTVGFGVDVQALWGIHLDG-GRGSRPDANNT---FFPSDSDGSAVHDWARIGG 116
           Y SGFT+GTVG G+D+Q  +G+ LD  GR  +  A+NT    FP D DG AVHD+++ G 
Sbjct: 62  YQSGFTEGTVGLGLDLQEWYGLRLDASGRAGKAGADNTPGSVFPLD-DGKAVHDFSKTGV 120

Query: 117 NAKARFSKTEVHYGSALAPMLPILVSNDGRLLPQTFEGGTLQSKEIDNLTINAGQLTHAM 176
             K R ++T++  G+ L P LP+L + DGRLLPQTF G  ++SK+  ++ + AG++   M
Sbjct: 121 TGKLRIAQTQLKAGN-LMPKLPVLTTEDGRLLPQTFRGYQVESKDFRDVNLIAGKIEQVM 179

Query: 177 GRASSNRTGLSVSGAF-----RDSNKFQFAGGDYKLTPDLTLQYYYSNLEDFYKQHFLGA 231
            R SSN  GLS++GA      + SN+F + G DY ++  L +QYYY++LE+FY+QHFLG 
Sbjct: 180 DRNSSNGQGLSIAGANDPVKGKASNQFYYGGVDYAVSKRLQVQYYYASLENFYQQHFLGL 239

Query: 232 THVFKIADNQSFKTDLRYFDSSSDGKNGQT-----GYAFDNNGGYAKNSGEVDNKTWSAM 286
            H +++   Q  K+DLRYF S++DGKNG       GY      G   N+G+VDN+ WSAM
Sbjct: 240 VHNWQLPVGQ-LKSDLRYFYSTADGKNGSVAGRGEGYVSSGYYGPGVNAGKVDNRLWSAM 298

Query: 287 FTYTLGGHALMLGHQQVGDDGGFVWLNQGSVRKDGSTSSLEGNGGASFYLFTDSMINQFA 346
           FTY L GH+L LG+Q+      F  +NQG               G S YL T+S   +F 
Sbjct: 299 FTYALSGHSLSLGYQKTTGQSDFPHINQGQ--------------GRSLYLITNSQSLKFV 344

Query: 347 RAGENTTFGQYSYDFAALGVPGLKASVSYLRGDDVRNRSGDGTYNEWERDARVDYTLQEG 406
            AGE  T G Y+YDFA LGVPGL++SV+Y+ G  +R    D   +EWERD R+DY +  G
Sbjct: 345 NAGEQATVGSYAYDFAGLGVPGLRSSVTYIHGSHIRTVGRDN--SEWERDLRLDYVIPTG 402

Query: 407 TLKGLGFSLRQGVYRGSGESALDKDQTRFIVNYT 440
           TLKGLGF+ R  V RG+     DKD+TR IV+Y+
Sbjct: 403 TLKGLGFTWRSAVLRGN--DTADKDETRLIVSYS 434