Pairwise Alignments

Query, 264 a.a., periplasmic cystine-binding protein from Pseudomonas putida KT2440

Subject, 250 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  142 bits (357), Expect = 9e-39
 Identities = 88/246 (35%), Positives = 132/246 (53%), Gaps = 4/246 (1%)

Query: 16  LLGAGLLSQAFAGEQLKTIQEKGVINVGLEGTYPPFSFQDENGKLTGFEVELSELLAKEL 75
           L+ A L   AF G       +   + V  + T+PP  F  ENGK TGF+VEL E + K L
Sbjct: 7   LVAAALSGFAFFGLAGMAQAQGEPLRVATDATFPPMEFV-ENGKRTGFDVELVEAIGKTL 65

Query: 76  GVKAKIQPTKWDGILAALESKRLDVVVNQVTISEERKKKYDFSEPYTVSGIQALILKKKA 135
           G K +     + G++  L SKR D+ V+ + I++ERKK  DF+ PY   G+  ++   K 
Sbjct: 66  GRKIEWIDIDFKGLVPGLISKRFDMAVSGIYITDERKKVVDFTVPYYAGGLVVMV---KD 122

Query: 136 EQLNIKGAQDLAGKKVGVGLGTNYEQWVKKDVPQADVRTYEDDPSKFADLRNGRIDAILI 195
               IK   D+ GKKV V +GT    + K+  PQ  +   E +   F  +  GR DA + 
Sbjct: 123 GNTAIKTPADINGKKVSVQVGTKSVSYTKEKFPQVQLMEVEKNQEMFNLVDIGRADAAVT 182

Query: 196 DRLAALEYAQKAKDTELAGDAFSRLESGVALRKGEPELLAAINKAIDKLKADGTLAKLSE 255
            + AA +Y +     ++  +  +  E G+A+RK  PEL  A+N AI+KLKADGT  ++ +
Sbjct: 183 GKPAAYQYVRTRGGLKVLPEQITTEEYGMAIRKDTPELTKAVNGAIEKLKADGTYDQIVK 242

Query: 256 KYFGAD 261
           K+F A+
Sbjct: 243 KWFSAN 248