Pairwise Alignments

Query, 631 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 1516 a.a., Bacteriophytochrome cph2 from Alteromonas macleodii MIT1002

 Score =  405 bits (1041), Expect = e-117
 Identities = 217/548 (39%), Positives = 330/548 (60%), Gaps = 7/548 (1%)

Query: 79   EDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEVIGQRPSKFKSGHH 138
            E  E+L +     ++  EGV +T+ Q   + VN A+   TG  +D+ +    S      +
Sbjct: 955  EAEEQLNLFKRSIENISEGVFITNTQFKFISVNNAYCGYTGETRDQALA---SYMHFHLY 1011

Query: 139  GLAFYQEVFATLAEKGEWSGEIWNRRKSGEIYPQWQTICAIRDDEGELSHYVAVFSDISA 198
              AF +E+  TL  KG WSGE+ + R +GE Y     I A+ DD+G++SH+V VFSDI++
Sbjct: 1012 PDAFTEEIKKTLKAKGNWSGEVESVRVNGERYEMELNIDAVHDDDGKISHFVGVFSDITS 1071

Query: 199  IKHSEQELAYLAHHDPLTGLPNRLLFTDRLEQALAAAQANKRGCALLLLDLDHFQSINDG 258
             K +E+EL  LA+ DPLT LPNR  F    +  +     +     LL LD+D+F+ IND 
Sbjct: 1072 RKSTEKELLKLANTDPLTELPNRSFFQASHQNLVRKGVQH----TLLCLDMDNFKKINDS 1127

Query: 259  LGHTIGDQLLKLVGERLGEVLGNGVTLARLGGDEFGVLVENCQQVGQAGKLAQCIIERMR 318
            LGH  GD L+K + +RL  + G   T  RLGGDEF VL+E+   +      AQ +++ + 
Sbjct: 1128 LGHQTGDILIKQIAKRLQRITGKSATCYRLGGDEFSVLMEDNADIHTVTHYAQNLLDTLS 1187

Query: 319  EPFQFDGNRLFISASVGISLYPSDALGAEQLLRNADSALYKAKSNGRACYALYTEELTAH 378
             PF  +     + AS+GI+ +P D    +++L+NAD+A+Y AK+NG   Y  ++ E+  +
Sbjct: 1188 RPFIINKQEFVLGASIGIAFFPDDGTSPQEMLKNADTAMYFAKNNGGNSYQFFSGEMNQN 1247

Query: 379  AQHRVETAAELRRALEQDELRVYFQPVHDLASGRQVGVETLVRWQHPRRGLVPPGEFIPI 438
            A  +++    +R+ ++ D   VY+QP  D+ASG+ V +E LVR++HP++G+V PG+FIP+
Sbjct: 1248 AVRQLQIENLIRQGIKDDLFTVYYQPKVDIASGKLVSMEALVRFEHPQKGIVSPGQFIPL 1307

Query: 439  AERTGLIAEIDTWVLRQACRQMVQWQAQGRQLAFVGVNISSRLFGQHELYRQVAEVLHDT 498
            AE+TG I EI   VLR+AC    +W  QG     V VNIS++ F    L  ++ ++L D 
Sbjct: 1308 AEQTGQIIEIGEQVLRKACADTKRWVNQGLFSGRVAVNISAKQFELPNLDDRINKILSDI 1367

Query: 499  GLAPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSSLLRLKRLPVQKL 558
            GL+P  LE E+TE  +ME PE  L+ + RLRE G+ LA+DDFGTGYSSL  LKR P+  L
Sbjct: 1368 GLSPLHLECEITEGTLMESPENGLQMMTRLRERGIHLALDDFGTGYSSLAYLKRFPLNTL 1427

Query: 559  KIDQGFVAGLPVDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQASFLLQEECQLGQGYW 618
            KID+ F+  +     D  +   II +A ++G++V AEG+E+  Q   L + +C++ QG+ 
Sbjct: 1428 KIDKAFIDDIAKSNVDRHMAAAIINIAHNLGLKVVAEGVEEEAQLDILRRYDCEMLQGFL 1487

Query: 619  FGRPVPAE 626
            + RP+ AE
Sbjct: 1488 YSRPLNAE 1495