Pairwise Alignments

Query, 260 a.a., putative Nitrate ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 275 a.a., Bicarbonate transport system permease protein CmpB from Xanthobacter sp. DMC5

 Score =  143 bits (360), Expect = 4e-39
 Identities = 85/242 (35%), Positives = 128/242 (52%), Gaps = 2/242 (0%)

Query: 5   LKRWPVRLASLLACLLFWQVAANVKMDLGLLTFTYVPTPKAVLDAAWQLLTSSTLLAHLG 64
           L R  + +A LL  L  W +  +V    G  +F    +P +   +   LL  S L  H+ 
Sbjct: 31  LSRPLLGIAGLLVLLALWWLGTDVLAAPG--SFARRFSPASAFASLGGLLLHSDLPIHVY 88

Query: 65  SSLARVFAGYATAALVGVALGLLIGRSKWAEDTLLPPLEVLRPIPAVAWIPLAILMFPSS 124
            SL R+F G   A  +GV LGL +G     E    P  + LR I  ++W+PLA+++F   
Sbjct: 89  VSLQRIFIGLGFALAIGVPLGLAVGTFGALEAATTPAFQFLRMISPLSWMPLAVMVFGVG 148

Query: 125 ELSMVFITFTGALFPILLNTVHGVEAVDPRLVASARSLGAGRWAILREVVLPGALPSIVT 184
           +  + F+    A++PILL+T  GV  +DPR +  ARSL A RW +L  V+LPG    I+T
Sbjct: 149 DRPIYFLLAFAAVWPILLSTAAGVRQLDPRWLLLARSLAATRWEMLSRVILPGVTGHILT 208

Query: 185 GLAIGMGTSWFCLVTAEMISGQFGIGYYTWESYTLQNYPDIVVGMLLIGVLGMGSSALVK 244
           G+ + +G  W  LV  EM+    G+GY+  ++     Y +++  +LLIGVLG    AL +
Sbjct: 209 GVRLAIGILWIVLVPCEMLGVSAGLGYFILDTRDRLAYSELMAMVLLIGVLGFALDALAR 268

Query: 245 RL 246
            L
Sbjct: 269 AL 270