Pairwise Alignments

Query, 472 a.a., putative efflux transporter from Pseudomonas putida KT2440

Subject, 472 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  176 bits (445), Expect = 2e-48
 Identities = 144/476 (30%), Positives = 214/476 (44%), Gaps = 29/476 (6%)

Query: 5   ILAGLCLSLGACMMVGPDYEVPG---DAAVQRNDLNGPLRQDADSVVSAPVPEDWWQLYQ 61
           + A + L+L  C M  P Y+VP     A  +    +GP      S   AP   +WW LY 
Sbjct: 8   LAALMLLALQGCSMA-PTYQVPAVDLPAGYREQTSDGPWHSAQPSDQLAP---EWWTLYN 63

Query: 62  DQRLNELVRQALSANTELRVAAANIAKARAQVEVAESQGGFNGGVKLGAQ--RLQESGEA 119
           D RLN+L +Q L AN +L  A A+   ++A    ++   G    +   AQ  R ++S   
Sbjct: 64  DSRLNDLQQQLLKANPDLAAALAHFDASQAYA--SQLHAGLFPQISASAQPLRQRQSDSR 121

Query: 120 FLQPEKVP-VANIGEAIISASYQFDLWGTFKRGTEAAKANADAVQAAADTARITLVADVV 178
            L+ +  P V N   A  S SY  DLWG  +    A  A A A       AR++L   + 
Sbjct: 122 PLRGDTQPSVYNSNTAGFSLSYDLDLWGKIRNQVAAGDAQAQASGDDLAVARLSLQHQLA 181

Query: 179 KAYTQVCSANEEYHIARESLDLQEQSVKLNQRLRDAGRGDETQVTRSQTQFKSLRAELPR 238
             Y Q+   + +  I   SLD   Q+++L +   +     E  +TR+Q Q    +A+   
Sbjct: 182 TLYVQLNGLDAQARILDRSLDDFRQALQLTRSRYEGKIASELDLTRAQNQLAEAKAQWDE 241

Query: 239 FKAERETGMYTLAALLAKPVDQLPAGTA-DCAELPHLNQLVPVGDGAALLKRRPDVRQAE 297
            + +R    + +  L+           +     LP +   +P    + LL+RRPD+  AE
Sbjct: 242 IRGQRNLTEHAIGELVGVAASDFSLSPSPQLISLPGIPSQLP----SHLLQRRPDIAAAE 297

Query: 298 RQLAAATAYIGVATGALYPDISIGAQVG--TIGILENLGEPSTNRWGFGPQISWSIPTNG 355
           R++ AA A IGVA  A YPD S+   +G  T G+  NL       W  GP ++  I   G
Sbjct: 298 RRVFAANANIGVAKAAWYPDFSLTGLIGGQTQGV-GNLLSAGNRYWALGPLVNLPIFDGG 356

Query: 356 T-RARIRMAEASTQAALAHFDGVVLNAIRETQTRLAQYSALLDRRDALAEAEKSAKEAAD 414
              A  R A+A  + A AH+   VL A+RE +  LAQ   L       A+ E++A +AA 
Sbjct: 357 RLSANERQAKAEFEEASAHYRSQVLKAVREVEDNLAQLRDLQQE----AQDEQAAADAAQ 412

Query: 415 QTHRY----YQAGRESFLADLQATRTYTDMRAQLAAANSQVAQGQIAVFLALGGGW 466
            T       YQAG  S+L  + A       +  L A  ++  Q  + +  ALGGGW
Sbjct: 413 HTQSLAMNSYQAGAVSYLDVVTAQTAALQAQRTLQAVQTRQLQASVGLVTALGGGW 468