Pairwise Alignments

Query, 472 a.a., putative efflux transporter from Pseudomonas putida KT2440

Subject, 480 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  671 bits (1732), Expect = 0.0
 Identities = 340/468 (72%), Positives = 399/468 (85%), Gaps = 1/468 (0%)

Query: 1   MKQLIL-AGLCLSLGACMMVGPDYEVPGDAAVQRNDLNGPLRQDADSVVSAPVPEDWWQL 59
           MKQL+  A L L L AC +VGPDY +P  AA+ R DL G +  + ++VVSAPVP DWW+L
Sbjct: 1   MKQLLATAALGLLLSACQVVGPDYSLPDKAAINRGDLQGHIAGEGNNVVSAPVPADWWKL 60

Query: 60  YQDQRLNELVRQALSANTELRVAAANIAKARAQVEVAESQGGFNGGVKLGAQRLQESGEA 119
           Y+D RL+ELVRQA+++NT+LRVAAAN+ +AR Q + AES GG++ G K  AQRLQESGEA
Sbjct: 61  YKDPRLDELVRQAMASNTDLRVAAANLQRARYQTQQAESAGGWSLGAKAEAQRLQESGEA 120

Query: 120 FLQPEKVPVANIGEAIISASYQFDLWGTFKRGTEAAKANADAVQAAADTARITLVADVVK 179
           FL  +KVPV NIG   I+ SYQFDL+GT +RG E+A+A+ADA QAAAD ARITLVADVV+
Sbjct: 121 FLLADKVPVGNIGSVGITTSYQFDLFGTLQRGIESAQASADAAQAAADIARITLVADVVR 180

Query: 180 AYTQVCSANEEYHIARESLDLQEQSVKLNQRLRDAGRGDETQVTRSQTQFKSLRAELPRF 239
           +YTQVC+ANEE  IA ESLDLQ QS +L QRLRDAGRGDETQVTRSQTQ+KSLRA++PR+
Sbjct: 181 SYTQVCAANEELAIANESLDLQAQSTQLTQRLRDAGRGDETQVTRSQTQYKSLRADMPRY 240

Query: 240 KAERETGMYTLAALLAKPVDQLPAGTADCAELPHLNQLVPVGDGAALLKRRPDVRQAERQ 299
           +A R+ G++ L+ LLAKPVDQLPAGT  CAELPH+ QL+PVGDGA LLKRRPDVRQAERQ
Sbjct: 241 EALRQAGLFRLSMLLAKPVDQLPAGTGTCAELPHIAQLLPVGDGATLLKRRPDVRQAERQ 300

Query: 300 LAAATAYIGVATGALYPDISIGAQVGTIGILENLGEPSTNRWGFGPQISWSIPTNGTRAR 359
           LAAATA IGVATGALYPDISIGA VGT+G+L+NLG+P+TNRWGFGP ISW++PTNG RAR
Sbjct: 301 LAAATARIGVATGALYPDISIGATVGTVGLLDNLGQPATNRWGFGPMISWTVPTNGARAR 360

Query: 360 IRMAEASTQAALAHFDGVVLNAIRETQTRLAQYSALLDRRDALAEAEKSAKEAADQTHRY 419
           +  AEA+TQ ALAHFDGVVLNAIRETQT LAQY+A L RRDALAEA +SAKEAA QTHR+
Sbjct: 361 VHEAEAATQGALAHFDGVVLNAIRETQTGLAQYTAQLQRRDALAEAGESAKEAAGQTHRF 420

Query: 420 YQAGRESFLADLQATRTYTDMRAQLAAANSQVAQGQIAVFLALGGGWK 467
           +QAGR SFLADLQATRTYTD+RAQLAAAN+QVA  QI +FLALGGGW+
Sbjct: 421 FQAGRASFLADLQATRTYTDVRAQLAAANTQVAMSQIDLFLALGGGWE 468