Pairwise Alignments

Query, 472 a.a., putative efflux transporter from Pseudomonas putida KT2440

Subject, 484 a.a., Probable efflux pump outer membrane protein TtgC from Pseudomonas putida KT2440

 Score =  148 bits (374), Expect = 3e-40
 Identities = 126/474 (26%), Positives = 214/474 (45%), Gaps = 24/474 (5%)

Query: 4   LILAGLCLSLGACMMVGPDYEVPGDAAVQRNDLNGPLRQDADSVVSAPVPEDWWQLYQDQ 63
           L LA     LG C ++ PDY+ P +A V      GP      S   A   + W Q + D 
Sbjct: 6   LSLAVTAFILGGCSLI-PDYQTP-EAPVAAQWPQGPAYSPTQSADVAAAEQGWRQFFHDP 63

Query: 64  RLNELVRQALSANTELRVAAANIAKARAQVEV-------AESQGGFNGGVKLGAQRLQES 116
            L +L++ +L  N +LRVAA N+   RAQ  +       A S  G     ++ A  + ++
Sbjct: 64  ALQQLIQTSLVNNRDLRVAALNLDAYRAQYRIQRADLFPAVSATGSGSRQRVPAN-MSQT 122

Query: 117 GEAFLQPEKVPVANIGEAIISASYQFDLWGTFKRGTEAAKANADAVQAAADTARITLVAD 176
           GE+ +  +      +      ++Y+ DL+G  +  TE A     + + A  + +I LVA 
Sbjct: 123 GESGITSQYSATLGV------SAYELDLFGRVRSLTEQALETYLSSEQARRSTQIALVAS 176

Query: 177 VVKAYTQVCSANEEYHIARESLDLQEQSVKLNQRLRDAGRGDETQVTRSQTQFKSLRAEL 236
           V  AY    +    + +  E+L   E+S  L +R  + G      V++++T  +  R + 
Sbjct: 177 VANAYYTWQADQALFKLTEETLKTYEESYNLTRRSNEVGVASALDVSQARTAVEGARVKY 236

Query: 237 PRFKAERETGMYTLAALLAKPVDQLPAGTADCAELPHLNQL--VPVGDGAALLKRRPDVR 294
            +++      + +L  LL   +   PA  A   EL   +QL  VP G  + +L+RRPD++
Sbjct: 237 SQYQRLVAQDVNSLTVLLGTGI---PADLAKPLELD-ADQLAEVPAGLPSDILQRRPDIQ 292

Query: 295 QAERQLAAATAYIGVATGALYPDISIGAQVGTIG-ILENLGEPSTNRWGFGPQISWSIPT 353
           +AE  L AA A IG A  A +P IS+ A  G++   + +L       W F PQI+  I  
Sbjct: 293 EAEHLLKAANANIGAARAAFFPSISLTANAGSLSPDMGHLFSGGQGTWLFQPQINLPIFN 352

Query: 354 NGT-RARIRMAEASTQAALAHFDGVVLNAIRETQTRLAQYSALLDRRDALAEAEKSAKEA 412
            G+ +A +  ++      +A ++  +  A +E    LA      ++  A  +  ++ ++ 
Sbjct: 353 AGSLKASLDYSKIQKDINVAKYEKTIQTAFQEVSDGLAARKTFEEQLQAQRDLVQANQDY 412

Query: 413 ADQTHRYYQAGRESFLADLQATRTYTDMRAQLAAANSQVAQGQIAVFLALGGGW 466
                R Y+ G +S L  L A R     +  L          ++ ++ ALGGGW
Sbjct: 413 YRLAERRYRIGIDSNLTFLDAQRNLFSAQQALIGDRLSQLTSEVNLYKALGGGW 466