Pairwise Alignments

Query, 472 a.a., putative efflux transporter from Pseudomonas putida KT2440

Subject, 490 a.a., Outer membrane protein OprM from Pseudomonas sp. DMC3

 Score =  178 bits (452), Expect = 3e-49
 Identities = 140/477 (29%), Positives = 232/477 (48%), Gaps = 22/477 (4%)

Query: 3   QLILAGLCLSLGACMMVGPDYEVPGDAAVQRNDLNGPLRQ--DADSVVSAPVPEDWWQLY 60
           +L+   LC++L +   VGPDY+ P  A + +       RQ   +DS+        WW+LY
Sbjct: 16  RLLSLSLCVALLSACAVGPDYQRPQTAEIAQFKEAEGWRQANPSDSLARGA----WWELY 71

Query: 61  QDQRLNELVRQALSANTELRVAAANIAKARAQVEVAESQGGFNGGVKLGAQRLQE---SG 117
            DQ+LN L+ +  S+N  +  + A   +A+A V  A      +  + LG  R  +   S 
Sbjct: 72  GDQQLNALIEKLNSSNQTVAQSEAQFRQAQALVRSARGAFYPSVDLSLGKTRSSQGTGSS 131

Query: 118 EAFLQPEKVPVANIGEAIISASYQFDLWGTFKRGTEAAKANADAVQAAADTARITLVADV 177
            + L      + +   A +  S++ D+WG  +RG EA +ANA A  A     R++  +++
Sbjct: 132 SSSLSSSSSGIRDTYNAQLGVSWEADVWGKLRRGLEADEANAQASFADLAAMRLSQQSEL 191

Query: 178 VKAYTQVCSANEEYHIARESLDLQEQSVKLNQRLRDAGRGDETQVTRSQTQFKSLRAELP 237
           V+ Y Q+   +++  +   ++   E+S+K+ Q    AG      V ++QTQ KS +A+L 
Sbjct: 192 VQNYLQLRVIDQQKRLLEATVAAYERSLKMTQNQYRAGVSGRDAVAQAQTQLKSTQADLV 251

Query: 238 RFKAERETGMYTLAALLAKPVDQLPA--GTADCAELPHLNQLVPVGDGAALLKRRPDVRQ 295
               +R      +A L      + PA    A+   +P+L Q VP+   + LL+RRPD+  
Sbjct: 252 DLIWQRAQFENAIAVL----TGEAPANFSIAESQSIPNLPQ-VPLSLPSQLLERRPDIAS 306

Query: 296 AERQLAAATAYIGVATGALYPDISIGAQVG-TIGILENLGEPSTNRWGFGPQISWSIPTN 354
           AER + AA A IGVA  A YPD+++    G +    +NL       W  GPQ+S  +   
Sbjct: 307 AERSVIAANANIGVAKAAYYPDLTLSLSGGYSSSSSKNLISLPNRFWSVGPQLSLPLFDG 366

Query: 355 GTR-ARIRMAEASTQAALAHFDGVVLNAIRETQTRLAQYSALLDRRDALAEAEKSAKEAA 413
           G R A +  +EA+    +A +   VL+  RE +  L Q     D      EA  +A+++ 
Sbjct: 367 GIRSAEVDRSEAAYDETVARYRQTVLDGFREVENYLVQLKVYEDEAAVRQEALDAARDSL 426

Query: 414 DQTHRYYQAGRESFL--ADLQATRTYTDMRAQLAAANSQVAQGQIAVFLALGGGWKG 468
             T   Y+AG  +++    +QAT   ++ R+ L    S++    + +  ALGGGW G
Sbjct: 427 RLTENQYKAGLIAYIDVVVVQAT-ALSNERSVLNILQSRLI-ASVQLIAALGGGWDG 481