Pairwise Alignments

Query, 291 a.a., putative efflux pump from Pseudomonas putida KT2440

Subject, 295 a.a., HlyD family secretion protein from Pseudomonas fluorescens GW456-L13

 Score =  469 bits (1207), Expect = e-137
 Identities = 233/290 (80%), Positives = 263/290 (90%)

Query: 1   MKKPLLTLGRVVLTLLVVTFAAVLVWQMVVYYMFAPWTRDGHIRADVIQIAPDVSGLIQK 60
           MKKP LTLGRVVLTLL+V+FA V+VW+MV+YYMFAPWTRDGHIRAD++QIAPDVSGLIQ+
Sbjct: 1   MKKPFLTLGRVVLTLLIVSFAVVVVWRMVMYYMFAPWTRDGHIRADIVQIAPDVSGLIQQ 60

Query: 61  VEVRDNQTVKRGDVLFTIDQDRFTLALRQAKATLGERQETLAQASREAQRNRKLGNLVAA 120
           VEVRDNQ VKRG VLF+ID DRF LALRQAKA + +R+E LAQA REA+RN+ LGNLV  
Sbjct: 61  VEVRDNQLVKRGQVLFSIDPDRFKLALRQAKAAVADREENLAQAQREAKRNKGLGNLVPG 120

Query: 121 EQLEESQSREARARSAVSEAQVAVDTAQLNLDRSVVRSPVDGYLNDRAPRNHEFVTAGRP 180
           EQLEESQS+ ARA+ A+ EAQVAVD+AQLNLDRSV+RSPVDGY+NDRAPR  EFV+AGRP
Sbjct: 121 EQLEESQSKVARAQVALMEAQVAVDSAQLNLDRSVIRSPVDGYVNDRAPRPQEFVSAGRP 180

Query: 181 VLSVVDSASYHVDGYFEETKLGGIHIGDAVDIRVMGDNTRLRGHVQSFAAGIEDRDRSSG 240
           VLSVVDS S+H+DGYFEETKL GIHIG +VDIRV+GDN RLRGHV+S  AGIEDRDR+SG
Sbjct: 181 VLSVVDSNSFHIDGYFEETKLNGIHIGQSVDIRVIGDNARLRGHVESIVAGIEDRDRTSG 240

Query: 241 ANLLPNVNPAFSWVRLAQRIPVRIAFDEVPQDFRMIAGRTATVSIIEGQR 290
            NLLPNVNPAFSWVRLAQRIPVRIAFD+VP DFRMIAGRTATVSII+ Q+
Sbjct: 241 NNLLPNVNPAFSWVRLAQRIPVRIAFDDVPDDFRMIAGRTATVSIIDDQQ 290