Pairwise Alignments

Query, 291 a.a., putative efflux pump from Pseudomonas putida KT2440

Subject, 285 a.a., Uncharacterized protein YdhJ from Escherichia coli ECRC98

 Score =  214 bits (546), Expect = 1e-60
 Identities = 109/273 (39%), Positives = 167/273 (61%), Gaps = 1/273 (0%)

Query: 14  TLLVVTFAAVLVWQMVVYYMFAPWTRDGHIRADVIQIAPDVSGLIQKVEVRDNQTVKRGD 73
           T++V   A +  W +  YYM +PWTRDG IRA+ + I P VSG I ++ ++DNQ V  GD
Sbjct: 11  TIIVAVVAVLAGWWLWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVELNIKDNQLVNAGD 70

Query: 74  VLFTIDQDRFTLALRQAKATLGERQETLAQASREAQRNRKLG-NLVAAEQLEESQSREAR 132
           +L TID+  F +A   A+A L + Q  LA+A+ EA R R L  N ++AE+L+ +      
Sbjct: 71  LLLTIDKTPFQIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFISAEELDTANLNVKA 130

Query: 133 ARSAVSEAQVAVDTAQLNLDRSVVRSPVDGYLNDRAPRNHEFVTAGRPVLSVVDSASYHV 192
            +++V  AQ  +   Q  L ++ +R+PV G++ +   R  ++   G+P+ ++VDS S++V
Sbjct: 131 MQASVDAAQATLKQTQWQLAQTEIRAPVSGWVTNLTTRIGDYADTGKPLFALVDSHSFYV 190

Query: 193 DGYFEETKLGGIHIGDAVDIRVMGDNTRLRGHVQSFAAGIEDRDRSSGANLLPNVNPAFS 252
            GYFEETKL  I  G    I +  DN  L+GHV S    I D+   S ++L+P+V P   
Sbjct: 191 IGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSIGRAIYDQSVESDSSLIPDVKPNVP 250

Query: 253 WVRLAQRIPVRIAFDEVPQDFRMIAGRTATVSI 285
           WVRLAQR+PVR A D+VP D  +++G T ++++
Sbjct: 251 WVRLAQRVPVRFALDKVPGDVTLVSGTTCSIAV 283